miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32790 5' -58.3 NC_007346.1 + 86437 0.68 0.916555
Target:  5'- gUUCGCGGugagcgcaUCACGCUCGGcCGCcUCg -3'
miRNA:   3'- aGAGCGCUg-------GGUGCGAGCCaGCGuAG- -5'
32790 5' -58.3 NC_007346.1 + 87696 0.68 0.916555
Target:  5'- aCUCGCuuUUCGCGCUCGaGUCG-AUCa -3'
miRNA:   3'- aGAGCGcuGGGUGCGAGC-CAGCgUAG- -5'
32790 5' -58.3 NC_007346.1 + 242998 0.83 0.240133
Target:  5'- aUCUCuCGAgCCACGCUCGGaCGCGUCa -3'
miRNA:   3'- -AGAGcGCUgGGUGCGAGCCaGCGUAG- -5'
32790 5' -58.3 NC_007346.1 + 244286 0.68 0.926764
Target:  5'- aCUauaaGCGAacCCCGCaCUCGGUCaCAUCa -3'
miRNA:   3'- aGAg---CGCU--GGGUGcGAGCCAGcGUAG- -5'
32790 5' -58.3 NC_007346.1 + 246371 0.76 0.534564
Target:  5'- aUCUCuCGAgCCACGCUCGGaCGCAc- -3'
miRNA:   3'- -AGAGcGCUgGGUGCGAGCCaGCGUag -5'
32790 5' -58.3 NC_007346.1 + 249460 0.68 0.916555
Target:  5'- aUCUCGCGAUCguaaaAUGCUCGGagaugaaaaguaUCGCGg- -3'
miRNA:   3'- -AGAGCGCUGGg----UGCGAGCC------------AGCGUag -5'
32790 5' -58.3 NC_007346.1 + 249513 0.83 0.219545
Target:  5'- aUCUCuCGAgCCACGCUCGGaCGCAUCa -3'
miRNA:   3'- -AGAGcGCUgGGUGCGAGCCaGCGUAG- -5'
32790 5' -58.3 NC_007346.1 + 250893 0.83 0.219545
Target:  5'- aUCUCuCGAgCCACGCUCGGaCGCAUCa -3'
miRNA:   3'- -AGAGcGCUgGGUGCGAGCCaGCGUAG- -5'
32790 5' -58.3 NC_007346.1 + 251548 0.71 0.807705
Target:  5'- aUUCaaaCGAgCCACGUUCGGaCGCAUCa -3'
miRNA:   3'- aGAGc--GCUgGGUGCGAGCCaGCGUAG- -5'
32790 5' -58.3 NC_007346.1 + 252832 0.83 0.219545
Target:  5'- aUCUCuCGAgCCACGCUCGGaCGCAUCa -3'
miRNA:   3'- -AGAGcGCUgGGUGCGAGCCaGCGUAG- -5'
32790 5' -58.3 NC_007346.1 + 253603 0.83 0.219545
Target:  5'- aUCUCuCGAgCCACGCUCGGaCGCAUCa -3'
miRNA:   3'- -AGAGcGCUgGGUGCGAGCCaGCGUAG- -5'
32790 5' -58.3 NC_007346.1 + 254336 0.83 0.219545
Target:  5'- aUCUCuCGAgCCACGCUCGGaCGCAUCa -3'
miRNA:   3'- -AGAGcGCUgGGUGCGAGCCaGCGUAG- -5'
32790 5' -58.3 NC_007346.1 + 255447 0.83 0.219545
Target:  5'- aUCUCuCGAgCCACGCUCGGaCGCAUCa -3'
miRNA:   3'- -AGAGcGCUgGGUGCGAGCCaGCGUAG- -5'
32790 5' -58.3 NC_007346.1 + 255633 0.66 0.967587
Target:  5'- uUCUcCGCGAgagaCCCGacgagaucgggcaGCUCGGUCuCGUCa -3'
miRNA:   3'- -AGA-GCGCU----GGGUg------------CGAGCCAGcGUAG- -5'
32790 5' -58.3 NC_007346.1 + 256368 0.83 0.219545
Target:  5'- aUCUCuCGAgCCACGCUCGGaCGCAUCa -3'
miRNA:   3'- -AGAGcGCUgGGUGCGAGCCaGCGUAG- -5'
32790 5' -58.3 NC_007346.1 + 257222 1.1 0.00444
Target:  5'- aUCUCGCGACCCACGCUCGGUCGCAUCa -3'
miRNA:   3'- -AGAGCGCUGGGUGCGAGCCAGCGUAG- -5'
32790 5' -58.3 NC_007346.1 + 257960 1.1 0.00444
Target:  5'- aUCUCGCGACCCACGCUCGGUCGCAUCa -3'
miRNA:   3'- -AGAGCGCUGGGUGCGAGCCAGCGUAG- -5'
32790 5' -58.3 NC_007346.1 + 258567 0.87 0.134788
Target:  5'- aUCUCGCGAgCCACGCUCGGaCGCAg- -3'
miRNA:   3'- -AGAGCGCUgGGUGCGAGCCaGCGUag -5'
32790 5' -58.3 NC_007346.1 + 259192 0.66 0.956161
Target:  5'- gCUCGCGACaCCAUGCU-GaUUGCGUa -3'
miRNA:   3'- aGAGCGCUG-GGUGCGAgCcAGCGUAg -5'
32790 5' -58.3 NC_007346.1 + 259336 1.01 0.017579
Target:  5'- aUCUCGCGACCCACGCUCGGaCGCGUCa -3'
miRNA:   3'- -AGAGCGCUGGGUGCGAGCCaGCGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.