Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32790 | 5' | -58.3 | NC_007346.1 | + | 269417 | 0.83 | 0.224547 |
Target: 5'- aUCUCGCGACCCGuuCaCGGUCGCAUCa -3' miRNA: 3'- -AGAGCGCUGGGUgcGaGCCAGCGUAG- -5' |
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32790 | 5' | -58.3 | NC_007346.1 | + | 274169 | 0.72 | 0.747963 |
Target: 5'- aUCUCGCG-CUCGCGUUCuugcguccugguGGUCGCAg- -3' miRNA: 3'- -AGAGCGCuGGGUGCGAG------------CCAGCGUag -5' |
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32790 | 5' | -58.3 | NC_007346.1 | + | 298145 | 0.68 | 0.907807 |
Target: 5'- gUCUUGCGucauuuaagaauucCCCugGCUUGGUUGUGUa -3' miRNA: 3'- -AGAGCGCu-------------GGGugCGAGCCAGCGUAg -5' |
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32790 | 5' | -58.3 | NC_007346.1 | + | 272446 | 0.67 | 0.95402 |
Target: 5'- --aCGCGACgCCguguuuuccauggauGCGCUgaCGGUgCGCAUCg -3' miRNA: 3'- agaGCGCUG-GG---------------UGCGA--GCCA-GCGUAG- -5' |
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32790 | 5' | -58.3 | NC_007346.1 | + | 86437 | 0.68 | 0.916555 |
Target: 5'- gUUCGCGGugagcgcaUCACGCUCGGcCGCcUCg -3' miRNA: 3'- aGAGCGCUg-------GGUGCGAGCCaGCGuAG- -5' |
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32790 | 5' | -58.3 | NC_007346.1 | + | 260695 | 0.73 | 0.693307 |
Target: 5'- aUCcCGCGAgCCACaCUCGGacgCGCGUCg -3' miRNA: 3'- -AGaGCGCUgGGUGcGAGCCa--GCGUAG- -5' |
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32790 | 5' | -58.3 | NC_007346.1 | + | 249460 | 0.68 | 0.916555 |
Target: 5'- aUCUCGCGAUCguaaaAUGCUCGGagaugaaaaguaUCGCGg- -3' miRNA: 3'- -AGAGCGCUGGg----UGCGAGCC------------AGCGUag -5' |
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32790 | 5' | -58.3 | NC_007346.1 | + | 244286 | 0.68 | 0.926764 |
Target: 5'- aCUauaaGCGAacCCCGCaCUCGGUCaCAUCa -3' miRNA: 3'- aGAg---CGCU--GGGUGcGAGCCAGcGUAG- -5' |
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32790 | 5' | -58.3 | NC_007346.1 | + | 342385 | 0.67 | 0.948753 |
Target: 5'- aUUCGCGugCUGCGaaUCGGUCG-GUCg -3' miRNA: 3'- aGAGCGCugGGUGCg-AGCCAGCgUAG- -5' |
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32790 | 5' | -58.3 | NC_007346.1 | + | 260081 | 0.76 | 0.51645 |
Target: 5'- aUCUCuCGAgCCACGCUCGaaCGCAUCa -3' miRNA: 3'- -AGAGcGCUgGGUGCGAGCcaGCGUAG- -5' |
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32790 | 5' | -58.3 | NC_007346.1 | + | 255633 | 0.66 | 0.967587 |
Target: 5'- uUCUcCGCGAgagaCCCGacgagaucgggcaGCUCGGUCuCGUCa -3' miRNA: 3'- -AGA-GCGCU----GGGUg------------CGAGCCAGcGUAG- -5' |
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32790 | 5' | -58.3 | NC_007346.1 | + | 242998 | 0.83 | 0.240133 |
Target: 5'- aUCUCuCGAgCCACGCUCGGaCGCGUCa -3' miRNA: 3'- -AGAGcGCUgGGUGCGAGCCaGCGUAG- -5' |
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32790 | 5' | -58.3 | NC_007346.1 | + | 256368 | 0.83 | 0.219545 |
Target: 5'- aUCUCuCGAgCCACGCUCGGaCGCAUCa -3' miRNA: 3'- -AGAGcGCUgGGUGCGAGCCaGCGUAG- -5' |
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32790 | 5' | -58.3 | NC_007346.1 | + | 255447 | 0.83 | 0.219545 |
Target: 5'- aUCUCuCGAgCCACGCUCGGaCGCAUCa -3' miRNA: 3'- -AGAGcGCUgGGUGCGAGCCaGCGUAG- -5' |
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32790 | 5' | -58.3 | NC_007346.1 | + | 254336 | 0.83 | 0.219545 |
Target: 5'- aUCUCuCGAgCCACGCUCGGaCGCAUCa -3' miRNA: 3'- -AGAGcGCUgGGUGCGAGCCaGCGUAG- -5' |
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32790 | 5' | -58.3 | NC_007346.1 | + | 253603 | 0.83 | 0.219545 |
Target: 5'- aUCUCuCGAgCCACGCUCGGaCGCAUCa -3' miRNA: 3'- -AGAGcGCUgGGUGCGAGCCaGCGUAG- -5' |
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32790 | 5' | -58.3 | NC_007346.1 | + | 252832 | 0.83 | 0.219545 |
Target: 5'- aUCUCuCGAgCCACGCUCGGaCGCAUCa -3' miRNA: 3'- -AGAGcGCUgGGUGCGAGCCaGCGUAG- -5' |
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32790 | 5' | -58.3 | NC_007346.1 | + | 246371 | 0.76 | 0.534564 |
Target: 5'- aUCUCuCGAgCCACGCUCGGaCGCAc- -3' miRNA: 3'- -AGAGcGCUgGGUGCGAGCCaGCGUag -5' |
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32790 | 5' | -58.3 | NC_007346.1 | + | 274979 | 0.75 | 0.590075 |
Target: 5'- cCUCGCGguGCCCAUGCUgcccGUCGCGUCc -3' miRNA: 3'- aGAGCGC--UGGGUGCGAgc--CAGCGUAG- -5' |
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32790 | 5' | -58.3 | NC_007346.1 | + | 264590 | 0.7 | 0.838278 |
Target: 5'- cCUUGCGAgauUCCaaGCGCUCGGgaaugagucugugUCGCGUCu -3' miRNA: 3'- aGAGCGCU---GGG--UGCGAGCC-------------AGCGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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