miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32797 3' -52.9 NC_007346.1 + 115608 0.66 0.999465
Target:  5'- -gGCCCACCAUUUUuugcuucgaauaCAUACCcagcacCGUCu -3'
miRNA:   3'- ggCGGGUGGUAAGA------------GUAUGGu-----GCAGc -5'
32797 3' -52.9 NC_007346.1 + 367829 0.66 0.999349
Target:  5'- -aGCUCGCCGgucUUCUUAUAUgACGUgGa -3'
miRNA:   3'- ggCGGGUGGU---AAGAGUAUGgUGCAgC- -5'
32797 3' -52.9 NC_007346.1 + 368072 0.66 0.999349
Target:  5'- -aGCUCGCCGgucUUCUUAUAUgACGUgGa -3'
miRNA:   3'- ggCGGGUGGU---AAGAGUAUGgUGCAgC- -5'
32797 3' -52.9 NC_007346.1 + 368315 0.66 0.999349
Target:  5'- -aGCUCGCCGgucUUCUUAUAUgACGUgGa -3'
miRNA:   3'- ggCGGGUGGU---AAGAGUAUGgUGCAgC- -5'
32797 3' -52.9 NC_007346.1 + 368557 0.66 0.999349
Target:  5'- -aGCUCGCCGgucUUCUUAUAUgACGUgGa -3'
miRNA:   3'- ggCGGGUGGU---AAGAGUAUGgUGCAgC- -5'
32797 3' -52.9 NC_007346.1 + 386754 0.66 0.999052
Target:  5'- --uUCCACCuuuuuAUUCUCAU-CCACGUUGu -3'
miRNA:   3'- ggcGGGUGG-----UAAGAGUAuGGUGCAGC- -5'
32797 3' -52.9 NC_007346.1 + 275819 0.66 0.99898
Target:  5'- uUGCCCGCCAccacaacacggcgUCUCAUucaaacccgGCgGCGUCu -3'
miRNA:   3'- gGCGGGUGGUa------------AGAGUA---------UGgUGCAGc -5'
32797 3' -52.9 NC_007346.1 + 406283 0.66 0.998864
Target:  5'- aCGCCCACgCAcgagCGUACCcccagaguauGCGUCGu -3'
miRNA:   3'- gGCGGGUG-GUaagaGUAUGG----------UGCAGC- -5'
32797 3' -52.9 NC_007346.1 + 208846 0.67 0.998548
Target:  5'- aCCGCCCACCuguuguccccgCUCcuggagACCACGcugCGc -3'
miRNA:   3'- -GGCGGGUGGuaa--------GAGua----UGGUGCa--GC- -5'
32797 3' -52.9 NC_007346.1 + 292771 0.67 0.998099
Target:  5'- gUCGCCC-CCGUUCacguUCGgaUACCGgGUCu -3'
miRNA:   3'- -GGCGGGuGGUAAG----AGU--AUGGUgCAGc -5'
32797 3' -52.9 NC_007346.1 + 309726 0.67 0.998099
Target:  5'- cCUGcCCCACCAccgccUUCUCcaccuccacccaAUGCCcCGUCGc -3'
miRNA:   3'- -GGC-GGGUGGU-----AAGAG------------UAUGGuGCAGC- -5'
32797 3' -52.9 NC_007346.1 + 98704 0.67 0.997653
Target:  5'- aCCGCCgGcggcgccugcgagcCCGUUCUugaCGUggcccACCGCGUCGg -3'
miRNA:   3'- -GGCGGgU--------------GGUAAGA---GUA-----UGGUGCAGC- -5'
32797 3' -52.9 NC_007346.1 + 25033 0.67 0.997379
Target:  5'- aCGCUCGCgAUUUUCAcgUGCC-CGUUGu -3'
miRNA:   3'- gGCGGGUGgUAAGAGU--AUGGuGCAGC- -5'
32797 3' -52.9 NC_007346.1 + 274761 0.68 0.996445
Target:  5'- gCCGCCaCGCuCAgccgUCGUGCC-CGUCGc -3'
miRNA:   3'- -GGCGG-GUG-GUaag-AGUAUGGuGCAGC- -5'
32797 3' -52.9 NC_007346.1 + 95320 0.68 0.996445
Target:  5'- uUGuCCUACCAUUCUCGU-CCAUGa-- -3'
miRNA:   3'- gGC-GGGUGGUAAGAGUAuGGUGCagc -5'
32797 3' -52.9 NC_007346.1 + 51000 0.68 0.996445
Target:  5'- gCUGCUCGCCAUUC-CGguggACCgAUGUCu -3'
miRNA:   3'- -GGCGGGUGGUAAGaGUa---UGG-UGCAGc -5'
32797 3' -52.9 NC_007346.1 + 212118 0.68 0.995253
Target:  5'- gUGUCCACaaacgaAUUCgUCAUACCAUgGUCGg -3'
miRNA:   3'- gGCGGGUGg-----UAAG-AGUAUGGUG-CAGC- -5'
32797 3' -52.9 NC_007346.1 + 187547 0.68 0.995253
Target:  5'- aCCGCCCucaccaccgccGCCGUcgcCUCAU-CCGcCGUCGc -3'
miRNA:   3'- -GGCGGG-----------UGGUAa--GAGUAuGGU-GCAGC- -5'
32797 3' -52.9 NC_007346.1 + 128066 0.69 0.992875
Target:  5'- aCCG-CCGCCAUcaaUCUCAccuucGCCGcCGUCGu -3'
miRNA:   3'- -GGCgGGUGGUA---AGAGUa----UGGU-GCAGC- -5'
32797 3' -52.9 NC_007346.1 + 273730 0.69 0.991898
Target:  5'- uUCGCCCAUCuUUCgcaCGUACUuuuugcuaACGUCGg -3'
miRNA:   3'- -GGCGGGUGGuAAGa--GUAUGG--------UGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.