miRNA display CGI


Results 1 - 20 of 129 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32799 3' -56.3 NC_007346.1 + 274432 1.11 0.006118
Target:  5'- aCACGGCGGCAAAUACGGCGACCCAGCc -3'
miRNA:   3'- -GUGCCGCCGUUUAUGCCGCUGGGUCG- -5'
32799 3' -56.3 NC_007346.1 + 349801 0.81 0.383937
Target:  5'- gACGGCGGCGGugGCGGCGGCggCGGCg -3'
miRNA:   3'- gUGCCGCCGUUuaUGCCGCUGg-GUCG- -5'
32799 3' -56.3 NC_007346.1 + 307167 0.8 0.439036
Target:  5'- gGCGGCGGCGAcgggcugggggGCGGCGgGCUCGGCg -3'
miRNA:   3'- gUGCCGCCGUUua---------UGCCGC-UGGGUCG- -5'
32799 3' -56.3 NC_007346.1 + 57430 0.79 0.475239
Target:  5'- aUugGGCGGCGGGggaaaugGCGGCGGCaauaaCGGCg -3'
miRNA:   3'- -GugCCGCCGUUUa------UGCCGCUGg----GUCG- -5'
32799 3' -56.3 NC_007346.1 + 309699 0.79 0.484078
Target:  5'- gGCGGCGGCGGcgACGGCGAagggacacagUCCAcGCu -3'
miRNA:   3'- gUGCCGCCGUUuaUGCCGCU----------GGGU-CG- -5'
32799 3' -56.3 NC_007346.1 + 58804 0.77 0.547932
Target:  5'- gAUGGUGGCGGAUAUGGCGAUggaGGCa -3'
miRNA:   3'- gUGCCGCCGUUUAUGCCGCUGgg-UCG- -5'
32799 3' -56.3 NC_007346.1 + 270653 0.77 0.566691
Target:  5'- gACGGUGGCAAcgGCGGUGACggCGGUg -3'
miRNA:   3'- gUGCCGCCGUUuaUGCCGCUGg-GUCG- -5'
32799 3' -56.3 NC_007346.1 + 242889 0.76 0.652441
Target:  5'- gGCGGUGGCAAAgGCGGCGAUgUgAGUg -3'
miRNA:   3'- gUGCCGCCGUUUaUGCCGCUGgG-UCG- -5'
32799 3' -56.3 NC_007346.1 + 128376 0.75 0.68668
Target:  5'- gGCGGCGGCGAAggugagauugaugGCGGCGGCggagaUGGCg -3'
miRNA:   3'- gUGCCGCCGUUUa------------UGCCGCUGg----GUCG- -5'
32799 3' -56.3 NC_007346.1 + 128211 0.74 0.709242
Target:  5'- gAUGGCGGCGGAgaugGCGGUGACggCGGUg -3'
miRNA:   3'- gUGCCGCCGUUUa---UGCCGCUGg-GUCG- -5'
32799 3' -56.3 NC_007346.1 + 86726 0.74 0.709242
Target:  5'- gUugGGCGGCGgagggugcggccAAUggucucaguaagACGGCGGCCCGcGCg -3'
miRNA:   3'- -GugCCGCCGU------------UUA------------UGCCGCUGGGU-CG- -5'
32799 3' -56.3 NC_007346.1 + 188078 0.74 0.718552
Target:  5'- gGCGGCGGCGuggGCGGCGGCggAGg -3'
miRNA:   3'- gUGCCGCCGUuuaUGCCGCUGggUCg -5'
32799 3' -56.3 NC_007346.1 + 310065 0.74 0.718552
Target:  5'- gAUGGCGGCGGAgaugGCGGCGGagaUGGCg -3'
miRNA:   3'- gUGCCGCCGUUUa---UGCCGCUgg-GUCG- -5'
32799 3' -56.3 NC_007346.1 + 128559 0.74 0.727797
Target:  5'- gGCGGUGGCGGugAUGGCGAUgCAGa -3'
miRNA:   3'- gUGCCGCCGUUuaUGCCGCUGgGUCg -5'
32799 3' -56.3 NC_007346.1 + 310260 0.74 0.727797
Target:  5'- gGCGGCGGCGGAUuuGGCGGCggugguaaaGGCg -3'
miRNA:   3'- gUGCCGCCGUUUAugCCGCUGgg-------UCG- -5'
32799 3' -56.3 NC_007346.1 + 189931 0.74 0.73697
Target:  5'- gACGGCGGCGGugAUGGUGGCggugaCGGCg -3'
miRNA:   3'- gUGCCGCCGUUuaUGCCGCUGg----GUCG- -5'
32799 3' -56.3 NC_007346.1 + 128718 0.73 0.76398
Target:  5'- gGCGGCGGUGGcgGCGGUGGCggCGGUg -3'
miRNA:   3'- gUGCCGCCGUUuaUGCCGCUGg-GUCG- -5'
32799 3' -56.3 NC_007346.1 + 307133 0.73 0.76398
Target:  5'- -nCGGCGGCGGcgACGGCGAaggggcacagUCCAcGCu -3'
miRNA:   3'- guGCCGCCGUUuaUGCCGCU----------GGGU-CG- -5'
32799 3' -56.3 NC_007346.1 + 198846 0.73 0.76398
Target:  5'- gAUGGCGGCGGcgAUGGCGGCggGGUg -3'
miRNA:   3'- gUGCCGCCGUUuaUGCCGCUGggUCG- -5'
32799 3' -56.3 NC_007346.1 + 266779 0.73 0.76398
Target:  5'- --aGGCacaauGCAgacAGUGCGGCGGCUCAGCa -3'
miRNA:   3'- gugCCGc----CGU---UUAUGCCGCUGGGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.