miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32799 3' -56.3 NC_007346.1 + 57430 0.79 0.475239
Target:  5'- aUugGGCGGCGGGggaaaugGCGGCGGCaauaaCGGCg -3'
miRNA:   3'- -GugCCGCCGUUUa------UGCCGCUGg----GUCG- -5'
32799 3' -56.3 NC_007346.1 + 198804 0.7 0.911852
Target:  5'- gGCGGUGGCGGAgaugGCGGUGGCggAGa -3'
miRNA:   3'- gUGCCGCCGUUUa---UGCCGCUGggUCg -5'
32799 3' -56.3 NC_007346.1 + 227910 0.7 0.918914
Target:  5'- -cCGGCGGCGucucagucaaucccgGCGGCGuCUCAGUc -3'
miRNA:   3'- guGCCGCCGUuua------------UGCCGCuGGGUCG- -5'
32799 3' -56.3 NC_007346.1 + 364665 0.66 0.987507
Target:  5'- aUAUGGCGGCcGAUcGCGGUgcuuuuaucugucaGAgCCAGUc -3'
miRNA:   3'- -GUGCCGCCGuUUA-UGCCG--------------CUgGGUCG- -5'
32799 3' -56.3 NC_007346.1 + 240995 0.73 0.780623
Target:  5'- gACGGCGGCAGAUuuguaucGCGcGCGACgCGuuGCu -3'
miRNA:   3'- gUGCCGCCGUUUA-------UGC-CGCUGgGU--CG- -5'
32799 3' -56.3 NC_007346.1 + 197818 0.72 0.830977
Target:  5'- gGCGGUGGCGAugGCGGUGGCggagaUGGCg -3'
miRNA:   3'- gUGCCGCCGUUuaUGCCGCUGg----GUCG- -5'
32799 3' -56.3 NC_007346.1 + 295146 0.71 0.853679
Target:  5'- aACGGCGGCGGAgguacUGCGGUGcuCCCugGGUc -3'
miRNA:   3'- gUGCCGCCGUUU-----AUGCCGCu-GGG--UCG- -5'
32799 3' -56.3 NC_007346.1 + 236572 0.71 0.867947
Target:  5'- aCAUGGCGGUAGAUGCGaCGAUgaaagaUAGCa -3'
miRNA:   3'- -GUGCCGCCGUUUAUGCcGCUGg-----GUCG- -5'
32799 3' -56.3 NC_007346.1 + 292166 0.71 0.881474
Target:  5'- uCGCGcuCGGCGGGUAUGGCuGcCCCGGUg -3'
miRNA:   3'- -GUGCc-GCCGUUUAUGCCG-CuGGGUCG- -5'
32799 3' -56.3 NC_007346.1 + 227847 0.7 0.907904
Target:  5'- -cCGGCGGCGucucagucaaucccgGCGGCGucucagucaauCCCGGCg -3'
miRNA:   3'- guGCCGCCGUuua------------UGCCGCu----------GGGUCG- -5'
32799 3' -56.3 NC_007346.1 + 197788 0.7 0.894228
Target:  5'- gGCGGUGGCGAugGCGGUGGa--GGCg -3'
miRNA:   3'- gUGCCGCCGUUuaUGCCGCUgggUCG- -5'
32799 3' -56.3 NC_007346.1 + 134003 0.71 0.881474
Target:  5'- uCGCGGCGGUGGAUggcagggucaaGCGGgGAcggcCCCAGa -3'
miRNA:   3'- -GUGCCGCCGUUUA-----------UGCCgCU----GGGUCg -5'
32799 3' -56.3 NC_007346.1 + 58804 0.77 0.547932
Target:  5'- gAUGGUGGCGGAUAUGGCGAUggaGGCa -3'
miRNA:   3'- gUGCCGCCGUUUAUGCCGCUGgg-UCG- -5'
32799 3' -56.3 NC_007346.1 + 57508 0.7 0.900306
Target:  5'- --aGGUGGCGAGggagGCGGCGAUggaGGCg -3'
miRNA:   3'- gugCCGCCGUUUa---UGCCGCUGgg-UCG- -5'
32799 3' -56.3 NC_007346.1 + 86726 0.74 0.709242
Target:  5'- gUugGGCGGCGgagggugcggccAAUggucucaguaagACGGCGGCCCGcGCg -3'
miRNA:   3'- -GugCCGCCGU------------UUA------------UGCCGCUGGGU-CG- -5'
32799 3' -56.3 NC_007346.1 + 238313 0.71 0.867947
Target:  5'- gACGGCGGCucaucuucgaccGGcgAUGGCGGCUCAucuGCg -3'
miRNA:   3'- gUGCCGCCG------------UUuaUGCCGCUGGGU---CG- -5'
32799 3' -56.3 NC_007346.1 + 165560 0.7 0.900306
Target:  5'- uGCGaGUGGCGAAggugGCGGCGAU--GGCg -3'
miRNA:   3'- gUGC-CGCCGUUUa---UGCCGCUGggUCG- -5'
32799 3' -56.3 NC_007346.1 + 256764 0.7 0.911852
Target:  5'- -cUGGUGGCGAGuUGCGgaguuggcugauGCGACCgAGCg -3'
miRNA:   3'- guGCCGCCGUUU-AUGC------------CGCUGGgUCG- -5'
32799 3' -56.3 NC_007346.1 + 198846 0.73 0.76398
Target:  5'- gAUGGCGGCGGcgAUGGCGGCggGGUg -3'
miRNA:   3'- gUGCCGCCGUUuaUGCCGCUGggUCG- -5'
32799 3' -56.3 NC_007346.1 + 75649 0.72 0.837944
Target:  5'- aUACGGCaGUAAAUGCucguaauGGUGACCCAaauGCa -3'
miRNA:   3'- -GUGCCGcCGUUUAUG-------CCGCUGGGU---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.