miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32799 3' -56.3 NC_007346.1 + 32383 0.69 0.927617
Target:  5'- gGCGGCGGCGGuuuUGGUGAC--GGCa -3'
miRNA:   3'- gUGCCGCCGUUuauGCCGCUGggUCG- -5'
32799 3' -56.3 NC_007346.1 + 57430 0.79 0.475239
Target:  5'- aUugGGCGGCGGGggaaaugGCGGCGGCaauaaCGGCg -3'
miRNA:   3'- -GugCCGCCGUUUa------UGCCGCUGg----GUCG- -5'
32799 3' -56.3 NC_007346.1 + 57508 0.7 0.900306
Target:  5'- --aGGUGGCGAGggagGCGGCGAUggaGGCg -3'
miRNA:   3'- gugCCGCCGUUUa---UGCCGCUGgg-UCG- -5'
32799 3' -56.3 NC_007346.1 + 58804 0.77 0.547932
Target:  5'- gAUGGUGGCGGAUAUGGCGAUggaGGCa -3'
miRNA:   3'- gUGCCGCCGUUUAUGCCGCUGgg-UCG- -5'
32799 3' -56.3 NC_007346.1 + 59301 0.69 0.922571
Target:  5'- gGCGGUGGUAAAgGCGGCGGa--GGUg -3'
miRNA:   3'- gUGCCGCCGUUUaUGCCGCUgggUCG- -5'
32799 3' -56.3 NC_007346.1 + 59727 0.66 0.984901
Target:  5'- gGCGGCGGCGGuggugAUGGUGGCgguGGUg -3'
miRNA:   3'- gUGCCGCCGUUua---UGCCGCUGgg-UCG- -5'
32799 3' -56.3 NC_007346.1 + 63455 0.66 0.984901
Target:  5'- gAUGGUGGCAAggAUGGUGGCaauGGUg -3'
miRNA:   3'- gUGCCGCCGUUuaUGCCGCUGgg-UCG- -5'
32799 3' -56.3 NC_007346.1 + 75649 0.72 0.837944
Target:  5'- aUACGGCaGUAAAUGCucguaauGGUGACCCAaauGCa -3'
miRNA:   3'- -GUGCCGcCGUUUAUG-------CCGCUGGGU---CG- -5'
32799 3' -56.3 NC_007346.1 + 83157 0.66 0.981326
Target:  5'- cUACGGCcauGGCAcuggGCGGUGgACCCAa- -3'
miRNA:   3'- -GUGCCG---CCGUuua-UGCCGC-UGGGUcg -5'
32799 3' -56.3 NC_007346.1 + 86726 0.74 0.709242
Target:  5'- gUugGGCGGCGgagggugcggccAAUggucucaguaagACGGCGGCCCGcGCg -3'
miRNA:   3'- -GugCCGCCGU------------UUA------------UGCCGCUGGGU-CG- -5'
32799 3' -56.3 NC_007346.1 + 98700 0.66 0.9844
Target:  5'- -cCGGCGGCGccUGCGagcccguucuugacGUGGCCCAccGCg -3'
miRNA:   3'- guGCCGCCGUuuAUGC--------------CGCUGGGU--CG- -5'
32799 3' -56.3 NC_007346.1 + 116372 0.66 0.989255
Target:  5'- uGCGGUGGUAcaagcGUugGGCGAUgCAu- -3'
miRNA:   3'- gUGCCGCCGUu----UAugCCGCUGgGUcg -5'
32799 3' -56.3 NC_007346.1 + 128022 0.73 0.781488
Target:  5'- gGCGGUGGUGGAcucgGCGGUggugGACUCGGCg -3'
miRNA:   3'- gUGCCGCCGUUUa---UGCCG----CUGGGUCG- -5'
32799 3' -56.3 NC_007346.1 + 128211 0.74 0.709242
Target:  5'- gAUGGCGGCGGAgaugGCGGUGACggCGGUg -3'
miRNA:   3'- gUGCCGCCGUUUa---UGCCGCUGg-GUCG- -5'
32799 3' -56.3 NC_007346.1 + 128249 0.69 0.927617
Target:  5'- -gUGGCGGUGAuggugGCGGCGGCgaCGGUg -3'
miRNA:   3'- guGCCGCCGUUua---UGCCGCUGg-GUCG- -5'
32799 3' -56.3 NC_007346.1 + 128376 0.75 0.68668
Target:  5'- gGCGGCGGCGAAggugagauugaugGCGGCGGCggagaUGGCg -3'
miRNA:   3'- gUGCCGCCGUUUa------------UGCCGCUGg----GUCG- -5'
32799 3' -56.3 NC_007346.1 + 128433 0.68 0.963781
Target:  5'- gGCGGCGGCGGuggagAUGGUGAagCAGa -3'
miRNA:   3'- gUGCCGCCGUUua---UGCCGCUggGUCg -5'
32799 3' -56.3 NC_007346.1 + 128505 0.69 0.941506
Target:  5'- gACGGCGGCGAAggugagauugAUGGCGGC--GGUg -3'
miRNA:   3'- gUGCCGCCGUUUa---------UGCCGCUGggUCG- -5'
32799 3' -56.3 NC_007346.1 + 128532 0.69 0.927617
Target:  5'- gGCGGCGGUGGAguUGGUGAUgCAGa -3'
miRNA:   3'- gUGCCGCCGUUUauGCCGCUGgGUCg -5'
32799 3' -56.3 NC_007346.1 + 128559 0.74 0.727797
Target:  5'- gGCGGUGGCGGugAUGGCGAUgCAGa -3'
miRNA:   3'- gUGCCGCCGUUuaUGCCGCUGgGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.