miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32802 3' -47.2 NC_007346.1 + 306328 0.66 1
Target:  5'- gGGGGUGggGgcgGUgGAGgcgGAGAUGgCg -3'
miRNA:   3'- -CUCCGCuuUa--CGgUUCaa-UUCUACgG- -5'
32802 3' -47.2 NC_007346.1 + 380760 0.66 1
Target:  5'- gGAGGUGAAG---CAAGUgAGGAUGCa -3'
miRNA:   3'- -CUCCGCUUUacgGUUCAaUUCUACGg -5'
32802 3' -47.2 NC_007346.1 + 201173 0.66 0.999999
Target:  5'- cGGGGaCGGAGgcgGCUGAGUUGGaggcGGUGCa -3'
miRNA:   3'- -CUCC-GCUUUa--CGGUUCAAUU----CUACGg -5'
32802 3' -47.2 NC_007346.1 + 243452 0.66 0.999999
Target:  5'- -uGGCGAGuUGUCGAGUUGAuuGAcGCg -3'
miRNA:   3'- cuCCGCUUuACGGUUCAAUU--CUaCGg -5'
32802 3' -47.2 NC_007346.1 + 274649 0.67 0.999998
Target:  5'- cGAuGCGcuGUGCgCGAG-UGAGAUGCUc -3'
miRNA:   3'- -CUcCGCuuUACG-GUUCaAUUCUACGG- -5'
32802 3' -47.2 NC_007346.1 + 57502 0.67 0.999998
Target:  5'- aGAGG-GAGGUGgCGAGggAGGcgGCg -3'
miRNA:   3'- -CUCCgCUUUACgGUUCaaUUCuaCGg -5'
32802 3' -47.2 NC_007346.1 + 341161 0.68 0.999991
Target:  5'- cAGGUGAuAUGcCCGAG--AAGAUGaCCa -3'
miRNA:   3'- cUCCGCUuUAC-GGUUCaaUUCUAC-GG- -5'
32802 3' -47.2 NC_007346.1 + 50635 0.68 0.999983
Target:  5'- cAGGUGua---CCAGGUUGcGAUGCCa -3'
miRNA:   3'- cUCCGCuuuacGGUUCAAUuCUACGG- -5'
32802 3' -47.2 NC_007346.1 + 260536 0.68 0.999983
Target:  5'- aGGGCGAGuUGaCGAGUUGgcuGAUGCg -3'
miRNA:   3'- cUCCGCUUuACgGUUCAAUu--CUACGg -5'
32802 3' -47.2 NC_007346.1 + 212112 0.68 0.999979
Target:  5'- aAGGCGAGagugcacgacgcuugGUGCCAGGaguacGUGCCu -3'
miRNA:   3'- cUCCGCUU---------------UACGGUUCaauucUACGG- -5'
32802 3' -47.2 NC_007346.1 + 255914 0.68 0.999976
Target:  5'- -uGGCGAGuUGUgGAGUUGgcuGAUGCg -3'
miRNA:   3'- cuCCGCUUuACGgUUCAAUu--CUACGg -5'
32802 3' -47.2 NC_007346.1 + 253149 0.68 0.999976
Target:  5'- -uGGCGAGuUGUgGAGUUGgcuGAUGCg -3'
miRNA:   3'- cuCCGCUUuACGgUUCAAUu--CUACGg -5'
32802 3' -47.2 NC_007346.1 + 252379 0.68 0.999976
Target:  5'- -uGGCGAGuUGUgGAGUUGgcuGAUGCg -3'
miRNA:   3'- cuCCGCUUuACGgUUCAAUu--CUACGg -5'
32802 3' -47.2 NC_007346.1 + 251093 0.68 0.999976
Target:  5'- -uGGCGAGuUGUgGAGUUGgcuGAUGCg -3'
miRNA:   3'- cuCCGCUUuACGgUUCAAUu--CUACGg -5'
32802 3' -47.2 NC_007346.1 + 214210 0.68 0.999976
Target:  5'- cGGGUGGGAucguaUGCCAaccuuGGUagauGGAUGCCu -3'
miRNA:   3'- cUCCGCUUU-----ACGGU-----UCAau--UCUACGG- -5'
32802 3' -47.2 NC_007346.1 + 253882 0.68 0.999976
Target:  5'- -uGGCGAGuUGUgGAGUUGgcuGAUGCg -3'
miRNA:   3'- cuCCGCUUuACGgUUCAAUu--CUACGg -5'
32802 3' -47.2 NC_007346.1 + 254993 0.68 0.999976
Target:  5'- -uGGCGAGuUGUgGAGUUGgcuGAUGCg -3'
miRNA:   3'- cuCCGCUUuACGgUUCAAUu--CUACGg -5'
32802 3' -47.2 NC_007346.1 + 264593 0.68 0.999976
Target:  5'- -uGGCGAGuUGUgGAGUUGgcuGAUGCg -3'
miRNA:   3'- cuCCGCUUuACGgUUCAAUu--CUACGg -5'
32802 3' -47.2 NC_007346.1 + 264924 0.69 0.999927
Target:  5'- -cGGUGAGAUGUCGucg-AGGAUGCg -3'
miRNA:   3'- cuCCGCUUUACGGUucaaUUCUACGg -5'
32802 3' -47.2 NC_007346.1 + 258089 0.7 0.999868
Target:  5'- cGAGGCGGccauuuagggaacuGGUGgCGAGUUGuGGAguugGCCg -3'
miRNA:   3'- -CUCCGCU--------------UUACgGUUCAAU-UCUa---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.