miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32812 3' -45.5 NC_007346.1 + 116486 0.66 1
Target:  5'- ---aCAa-AAGAGUGCAagcgaugUACCGCAUCg -3'
miRNA:   3'- agaaGUggUUCUUAUGU-------AUGGCGUAG- -5'
32812 3' -45.5 NC_007346.1 + 400057 0.68 1
Target:  5'- ---cCACCAaauGGcaacGAUACAUGCCuGCGUCa -3'
miRNA:   3'- agaaGUGGU---UC----UUAUGUAUGG-CGUAG- -5'
32812 3' -45.5 NC_007346.1 + 191335 0.66 1
Target:  5'- aCUUCACCAGGAcgAUGgGUACa--AUCu -3'
miRNA:   3'- aGAAGUGGUUCU--UAUgUAUGgcgUAG- -5'
32812 3' -45.5 NC_007346.1 + 146622 0.66 1
Target:  5'- --aUCACCAAGAGacuuuaaauccuUGCGaACCGUuUCa -3'
miRNA:   3'- agaAGUGGUUCUU------------AUGUaUGGCGuAG- -5'
32812 3' -45.5 NC_007346.1 + 196920 0.68 1
Target:  5'- aCUUCACCAA--AUAUAguuguauCUGCAUCa -3'
miRNA:   3'- aGAAGUGGUUcuUAUGUau-----GGCGUAG- -5'
32812 3' -45.5 NC_007346.1 + 95394 0.66 1
Target:  5'- -aUUCuACUAucAGGAUACAUugCaGCGUCa -3'
miRNA:   3'- agAAG-UGGU--UCUUAUGUAugG-CGUAG- -5'
32812 3' -45.5 NC_007346.1 + 212130 0.67 1
Target:  5'- gCUUggUGCCAGGAGUACGUGCCu---- -3'
miRNA:   3'- aGAA--GUGGUUCUUAUGUAUGGcguag -5'
32812 3' -45.5 NC_007346.1 + 282869 0.68 1
Target:  5'- uUCUUCugCAcGA--GCAUAuaGCAUCg -3'
miRNA:   3'- -AGAAGugGUuCUuaUGUAUggCGUAG- -5'
32812 3' -45.5 NC_007346.1 + 248807 0.67 1
Target:  5'- ---aCACCG-----ACGUGCCGCAUCc -3'
miRNA:   3'- agaaGUGGUucuuaUGUAUGGCGUAG- -5'
32812 3' -45.5 NC_007346.1 + 287215 0.67 1
Target:  5'- gCUUCACCAAaaaguCAgACCGCAUg -3'
miRNA:   3'- aGAAGUGGUUcuuauGUaUGGCGUAg -5'
32812 3' -45.5 NC_007346.1 + 264103 0.67 1
Target:  5'- --aUCACCGAGAcgcCGUcuAUCGCGUCu -3'
miRNA:   3'- agaAGUGGUUCUuauGUA--UGGCGUAG- -5'
32812 3' -45.5 NC_007346.1 + 216879 0.67 1
Target:  5'- uUCUacgCACCGAGuuuUGCAaACCcaaGCAUCa -3'
miRNA:   3'- -AGAa--GUGGUUCuu-AUGUaUGG---CGUAG- -5'
32812 3' -45.5 NC_007346.1 + 216322 0.66 1
Target:  5'- gUCUgcagCGCCGAGuguguccUAUGUGCCGCGc- -3'
miRNA:   3'- -AGAa---GUGGUUCuu-----AUGUAUGGCGUag -5'
32812 3' -45.5 NC_007346.1 + 331541 0.66 1
Target:  5'- cCUUCAUCGcAGAGUuCAU-CCGCAa- -3'
miRNA:   3'- aGAAGUGGU-UCUUAuGUAuGGCGUag -5'
32812 3' -45.5 NC_007346.1 + 238404 0.66 1
Target:  5'- gCUUgcCACCgAGGAGUACAUuaacgggcGCCGCGc- -3'
miRNA:   3'- aGAA--GUGG-UUCUUAUGUA--------UGGCGUag -5'
32812 3' -45.5 NC_007346.1 + 55002 0.66 1
Target:  5'- --aUCACCAAuaagacGAAUGCAUGCauacacuccgCGCAUUg -3'
miRNA:   3'- agaAGUGGUU------CUUAUGUAUG----------GCGUAG- -5'
32812 3' -45.5 NC_007346.1 + 269467 0.66 1
Target:  5'- --gUUGCUAGGAAUACAaucgacgaaguaUAUCGCAUUa -3'
miRNA:   3'- agaAGUGGUUCUUAUGU------------AUGGCGUAG- -5'
32812 3' -45.5 NC_007346.1 + 80682 0.67 1
Target:  5'- uUCUgcgCGCCcAGAAUaACGUACCGauaAUUa -3'
miRNA:   3'- -AGAa--GUGGuUCUUA-UGUAUGGCg--UAG- -5'
32812 3' -45.5 NC_007346.1 + 186955 0.67 1
Target:  5'- ---cCACCuGGAAUGCGUAacCCGCGc- -3'
miRNA:   3'- agaaGUGGuUCUUAUGUAU--GGCGUag -5'
32812 3' -45.5 NC_007346.1 + 237305 0.67 1
Target:  5'- ---cCGCCaAAGAAcGCGUGCCGUAa- -3'
miRNA:   3'- agaaGUGG-UUCUUaUGUAUGGCGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.