miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32812 3' -45.5 NC_007346.1 + 400057 0.68 1
Target:  5'- ---cCACCAaauGGcaacGAUACAUGCCuGCGUCa -3'
miRNA:   3'- agaaGUGGU---UC----UUAUGUAUGG-CGUAG- -5'
32812 3' -45.5 NC_007346.1 + 353474 0.69 0.999999
Target:  5'- ---gCACCGAGAccccacagAUGCGUGCUGCGc- -3'
miRNA:   3'- agaaGUGGUUCU--------UAUGUAUGGCGUag -5'
32812 3' -45.5 NC_007346.1 + 348327 0.8 0.953467
Target:  5'- cUCUUCACCAuuacGAAUACGUuccauGCaCGCAUCa -3'
miRNA:   3'- -AGAAGUGGUu---CUUAUGUA-----UG-GCGUAG- -5'
32812 3' -45.5 NC_007346.1 + 335865 0.72 0.999843
Target:  5'- ---cCAUCAAGAAUugGUAUUGCAUUa -3'
miRNA:   3'- agaaGUGGUUCUUAugUAUGGCGUAG- -5'
32812 3' -45.5 NC_007346.1 + 332316 0.78 0.980932
Target:  5'- aUCUaUACCAGGA--GCAUGCCGCAcUCg -3'
miRNA:   3'- -AGAaGUGGUUCUuaUGUAUGGCGU-AG- -5'
32812 3' -45.5 NC_007346.1 + 331541 0.66 1
Target:  5'- cCUUCAUCGcAGAGUuCAU-CCGCAa- -3'
miRNA:   3'- aGAAGUGGU-UCUUAuGUAuGGCGUag -5'
32812 3' -45.5 NC_007346.1 + 309194 0.7 0.999977
Target:  5'- cUCUcUGCCGAGAuUGCAUcCaCGCAUCg -3'
miRNA:   3'- -AGAaGUGGUUCUuAUGUAuG-GCGUAG- -5'
32812 3' -45.5 NC_007346.1 + 287215 0.67 1
Target:  5'- gCUUCACCAAaaaguCAgACCGCAUg -3'
miRNA:   3'- aGAAGUGGUUcuuauGUaUGGCGUAg -5'
32812 3' -45.5 NC_007346.1 + 282869 0.68 1
Target:  5'- uUCUUCugCAcGA--GCAUAuaGCAUCg -3'
miRNA:   3'- -AGAAGugGUuCUuaUGUAUggCGUAG- -5'
32812 3' -45.5 NC_007346.1 + 273565 0.67 1
Target:  5'- --cUCACCGAGAAUGaAUggaguaaauguaAUCGCAUCc -3'
miRNA:   3'- agaAGUGGUUCUUAUgUA------------UGGCGUAG- -5'
32812 3' -45.5 NC_007346.1 + 269467 0.66 1
Target:  5'- --gUUGCUAGGAAUACAaucgacgaaguaUAUCGCAUUa -3'
miRNA:   3'- agaAGUGGUUCUUAUGU------------AUGGCGUAG- -5'
32812 3' -45.5 NC_007346.1 + 264933 0.7 0.999991
Target:  5'- --gUCGUCGAGGAUGCGUGCuCGCAa- -3'
miRNA:   3'- agaAGUGGUUCUUAUGUAUG-GCGUag -5'
32812 3' -45.5 NC_007346.1 + 264103 0.67 1
Target:  5'- --aUCACCGAGAcgcCGUcuAUCGCGUCu -3'
miRNA:   3'- agaAGUGGUUCUuauGUA--UGGCGUAG- -5'
32812 3' -45.5 NC_007346.1 + 248807 0.67 1
Target:  5'- ---aCACCG-----ACGUGCCGCAUCc -3'
miRNA:   3'- agaaGUGGUucuuaUGUAUGGCGUAG- -5'
32812 3' -45.5 NC_007346.1 + 238404 0.66 1
Target:  5'- gCUUgcCACCgAGGAGUACAUuaacgggcGCCGCGc- -3'
miRNA:   3'- aGAA--GUGG-UUCUUAUGUA--------UGGCGUag -5'
32812 3' -45.5 NC_007346.1 + 237305 0.67 1
Target:  5'- ---cCGCCaAAGAAcGCGUGCCGUAa- -3'
miRNA:   3'- agaaGUGG-UUCUUaUGUAUGGCGUag -5'
32812 3' -45.5 NC_007346.1 + 219663 0.69 0.999997
Target:  5'- ---cCACC-AGAGguugACAUACCGCAg- -3'
miRNA:   3'- agaaGUGGuUCUUa---UGUAUGGCGUag -5'
32812 3' -45.5 NC_007346.1 + 216879 0.67 1
Target:  5'- uUCUacgCACCGAGuuuUGCAaACCcaaGCAUCa -3'
miRNA:   3'- -AGAa--GUGGUUCuu-AUGUaUGG---CGUAG- -5'
32812 3' -45.5 NC_007346.1 + 216322 0.66 1
Target:  5'- gUCUgcagCGCCGAGuguguccUAUGUGCCGCGc- -3'
miRNA:   3'- -AGAa---GUGGUUCuu-----AUGUAUGGCGUag -5'
32812 3' -45.5 NC_007346.1 + 212130 0.67 1
Target:  5'- gCUUggUGCCAGGAGUACGUGCCu---- -3'
miRNA:   3'- aGAA--GUGGUUCUUAUGUAUGGcguag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.