Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32813 | 3' | -43.2 | NC_007346.1 | + | 249312 | 0.66 | 1 |
Target: 5'- -uUCAAGUugAUUAACGacgugucaccggguuUCGUCGACa -3' miRNA: 3'- cuAGUUUAugUAGUUGU---------------GGCAGUUGa -5' |
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32813 | 3' | -43.2 | NC_007346.1 | + | 177038 | 0.66 | 1 |
Target: 5'- --cCAuAUGCAUCGACugcuUCGUCGAUUu -3' miRNA: 3'- cuaGUuUAUGUAGUUGu---GGCAGUUGA- -5' |
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32813 | 3' | -43.2 | NC_007346.1 | + | 392196 | 0.66 | 1 |
Target: 5'- ---gGGGUGCGUCGACAguggggCGUCAGCa -3' miRNA: 3'- cuagUUUAUGUAGUUGUg-----GCAGUUGa -5' |
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32813 | 3' | -43.2 | NC_007346.1 | + | 231364 | 0.66 | 1 |
Target: 5'- gGAUU--GUACGUCGAUugCGUCGu-- -3' miRNA: 3'- -CUAGuuUAUGUAGUUGugGCAGUuga -5' |
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32813 | 3' | -43.2 | NC_007346.1 | + | 212412 | 0.66 | 1 |
Target: 5'- uGGUCAugu-UAUCGACugUGUUGACUg -3' miRNA: 3'- -CUAGUuuauGUAGUUGugGCAGUUGA- -5' |
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32813 | 3' | -43.2 | NC_007346.1 | + | 289421 | 0.66 | 1 |
Target: 5'- aGAUCAGAaGCcgCAGagaCGUCAACa -3' miRNA: 3'- -CUAGUUUaUGuaGUUgugGCAGUUGa -5' |
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32813 | 3' | -43.2 | NC_007346.1 | + | 86918 | 0.66 | 1 |
Target: 5'- cGGUCGAcUGCAUCuGCGCag-CGACUg -3' miRNA: 3'- -CUAGUUuAUGUAGuUGUGgcaGUUGA- -5' |
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32813 | 3' | -43.2 | NC_007346.1 | + | 336975 | 0.66 | 1 |
Target: 5'- cGAUCAAAUGCAUUAcuaucauuugauuucACACgCGUCc--- -3' miRNA: 3'- -CUAGUUUAUGUAGU---------------UGUG-GCAGuuga -5' |
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32813 | 3' | -43.2 | NC_007346.1 | + | 192952 | 0.66 | 1 |
Target: 5'- -cUCuAAUAUAUU--UACCGUCAACUg -3' miRNA: 3'- cuAGuUUAUGUAGuuGUGGCAGUUGA- -5' |
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32813 | 3' | -43.2 | NC_007346.1 | + | 153793 | 0.66 | 1 |
Target: 5'- aAUCAGGaGCAUCugcuGCACaGUCGGCa -3' miRNA: 3'- cUAGUUUaUGUAGu---UGUGgCAGUUGa -5' |
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32813 | 3' | -43.2 | NC_007346.1 | + | 205437 | 0.67 | 1 |
Target: 5'- -uUCAAGUGCAUCGAU--UGUCAugUc -3' miRNA: 3'- cuAGUUUAUGUAGUUGugGCAGUugA- -5' |
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32813 | 3' | -43.2 | NC_007346.1 | + | 222158 | 0.67 | 1 |
Target: 5'- cGUCAAAUACAgccccacuguccgaaUCGGaAUCGUCAGCa -3' miRNA: 3'- cUAGUUUAUGU---------------AGUUgUGGCAGUUGa -5' |
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32813 | 3' | -43.2 | NC_007346.1 | + | 202974 | 0.67 | 1 |
Target: 5'- uAUCAGAUGCGUCAucagggcagucggucACAuCCGuaaUCGACUc -3' miRNA: 3'- cUAGUUUAUGUAGU---------------UGU-GGC---AGUUGA- -5' |
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32813 | 3' | -43.2 | NC_007346.1 | + | 371129 | 0.67 | 1 |
Target: 5'- uAUCGGGUGCA---ACuCCGUCGGCUg -3' miRNA: 3'- cUAGUUUAUGUaguUGuGGCAGUUGA- -5' |
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32813 | 3' | -43.2 | NC_007346.1 | + | 167147 | 0.68 | 1 |
Target: 5'- --aUAAAUGCAUCGAUGCCGcCAuauACUc -3' miRNA: 3'- cuaGUUUAUGUAGUUGUGGCaGU---UGA- -5' |
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32813 | 3' | -43.2 | NC_007346.1 | + | 350394 | 0.68 | 1 |
Target: 5'- uGUCAAAaucUGCAUCcACuuccguaucaaaACCGUCAACa -3' miRNA: 3'- cUAGUUU---AUGUAGuUG------------UGGCAGUUGa -5' |
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32813 | 3' | -43.2 | NC_007346.1 | + | 48047 | 0.68 | 1 |
Target: 5'- cGUCGAAUGCAUCcacGACACgcaCGUCcACUu -3' miRNA: 3'- cUAGUUUAUGUAG---UUGUG---GCAGuUGA- -5' |
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32813 | 3' | -43.2 | NC_007346.1 | + | 139645 | 0.68 | 1 |
Target: 5'- --cCAAGUACAaUAACACCGaCGAUUg -3' miRNA: 3'- cuaGUUUAUGUaGUUGUGGCaGUUGA- -5' |
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32813 | 3' | -43.2 | NC_007346.1 | + | 9344 | 0.68 | 1 |
Target: 5'- ---gAAAUACAUCAGaACCGUCAu-- -3' miRNA: 3'- cuagUUUAUGUAGUUgUGGCAGUuga -5' |
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32813 | 3' | -43.2 | NC_007346.1 | + | 31100 | 0.68 | 1 |
Target: 5'- aGAUCAAuUACAUgGGCAUgGUCAc-- -3' miRNA: 3'- -CUAGUUuAUGUAgUUGUGgCAGUuga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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