miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32813 3' -43.2 NC_007346.1 + 9344 0.68 1
Target:  5'- ---gAAAUACAUCAGaACCGUCAu-- -3'
miRNA:   3'- cuagUUUAUGUAGUUgUGGCAGUuga -5'
32813 3' -43.2 NC_007346.1 + 11204 0.68 1
Target:  5'- -uUCGGGUAUAUUaaaaGAUGCCGUCGAUa -3'
miRNA:   3'- cuAGUUUAUGUAG----UUGUGGCAGUUGa -5'
32813 3' -43.2 NC_007346.1 + 30629 1.11 0.099697
Target:  5'- cGAUCAAAUACAUCAACACCGUCAACUa -3'
miRNA:   3'- -CUAGUUUAUGUAGUUGUGGCAGUUGA- -5'
32813 3' -43.2 NC_007346.1 + 31100 0.68 1
Target:  5'- aGAUCAAuUACAUgGGCAUgGUCAc-- -3'
miRNA:   3'- -CUAGUUuAUGUAgUUGUGgCAGUuga -5'
32813 3' -43.2 NC_007346.1 + 48047 0.68 1
Target:  5'- cGUCGAAUGCAUCcacGACACgcaCGUCcACUu -3'
miRNA:   3'- cUAGUUUAUGUAG---UUGUG---GCAGuUGA- -5'
32813 3' -43.2 NC_007346.1 + 86918 0.66 1
Target:  5'- cGGUCGAcUGCAUCuGCGCag-CGACUg -3'
miRNA:   3'- -CUAGUUuAUGUAGuUGUGgcaGUUGA- -5'
32813 3' -43.2 NC_007346.1 + 115625 0.74 0.999935
Target:  5'- -uUCGAAUACAUaccCAGCACCGUCu--- -3'
miRNA:   3'- cuAGUUUAUGUA---GUUGUGGCAGuuga -5'
32813 3' -43.2 NC_007346.1 + 119296 0.79 0.994839
Target:  5'- -uUCugguAAUGCGUCAACAUCGUCAAUa -3'
miRNA:   3'- cuAGu---UUAUGUAGUUGUGGCAGUUGa -5'
32813 3' -43.2 NC_007346.1 + 139645 0.68 1
Target:  5'- --cCAAGUACAaUAACACCGaCGAUUg -3'
miRNA:   3'- cuaGUUUAUGUaGUUGUGGCaGUUGA- -5'
32813 3' -43.2 NC_007346.1 + 153793 0.66 1
Target:  5'- aAUCAGGaGCAUCugcuGCACaGUCGGCa -3'
miRNA:   3'- cUAGUUUaUGUAGu---UGUGgCAGUUGa -5'
32813 3' -43.2 NC_007346.1 + 167147 0.68 1
Target:  5'- --aUAAAUGCAUCGAUGCCGcCAuauACUc -3'
miRNA:   3'- cuaGUUUAUGUAGUUGUGGCaGU---UGA- -5'
32813 3' -43.2 NC_007346.1 + 168936 0.75 0.999914
Target:  5'- uGGUCGAAUACAUCAcucaGCAUCG-CAAUa -3'
miRNA:   3'- -CUAGUUUAUGUAGU----UGUGGCaGUUGa -5'
32813 3' -43.2 NC_007346.1 + 174576 0.75 0.999856
Target:  5'- aGUCAAAUAC-UCGACACUGUUAuGCUa -3'
miRNA:   3'- cUAGUUUAUGuAGUUGUGGCAGU-UGA- -5'
32813 3' -43.2 NC_007346.1 + 175853 0.68 1
Target:  5'- --aCAAAUACAUCAACAUgGUUugguguACUu -3'
miRNA:   3'- cuaGUUUAUGUAGUUGUGgCAGu-----UGA- -5'
32813 3' -43.2 NC_007346.1 + 177038 0.66 1
Target:  5'- --cCAuAUGCAUCGACugcuUCGUCGAUUu -3'
miRNA:   3'- cuaGUuUAUGUAGUUGu---GGCAGUUGA- -5'
32813 3' -43.2 NC_007346.1 + 188766 0.71 0.999999
Target:  5'- uGGUCAGAcaUGCAUUAAacCACCGUCAcCg -3'
miRNA:   3'- -CUAGUUU--AUGUAGUU--GUGGCAGUuGa -5'
32813 3' -43.2 NC_007346.1 + 192952 0.66 1
Target:  5'- -cUCuAAUAUAUU--UACCGUCAACUg -3'
miRNA:   3'- cuAGuUUAUGUAGuuGUGGCAGUUGA- -5'
32813 3' -43.2 NC_007346.1 + 202974 0.67 1
Target:  5'- uAUCAGAUGCGUCAucagggcagucggucACAuCCGuaaUCGACUc -3'
miRNA:   3'- cUAGUUUAUGUAGU---------------UGU-GGC---AGUUGA- -5'
32813 3' -43.2 NC_007346.1 + 205437 0.67 1
Target:  5'- -uUCAAGUGCAUCGAU--UGUCAugUc -3'
miRNA:   3'- cuAGUUUAUGUAGUUGugGCAGUugA- -5'
32813 3' -43.2 NC_007346.1 + 212412 0.66 1
Target:  5'- uGGUCAugu-UAUCGACugUGUUGACUg -3'
miRNA:   3'- -CUAGUuuauGUAGUUGugGCAGUUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.