miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32813 3' -43.2 NC_007346.1 + 260096 0.73 0.999995
Target:  5'- -cUCGAAcGCAUCAGCcaACuCGUCAACUc -3'
miRNA:   3'- cuAGUUUaUGUAGUUG--UG-GCAGUUGA- -5'
32813 3' -43.2 NC_007346.1 + 371129 0.67 1
Target:  5'- uAUCGGGUGCA---ACuCCGUCGGCUg -3'
miRNA:   3'- cUAGUUUAUGUaguUGuGGCAGUUGA- -5'
32813 3' -43.2 NC_007346.1 + 231364 0.66 1
Target:  5'- gGAUU--GUACGUCGAUugCGUCGu-- -3'
miRNA:   3'- -CUAGuuUAUGUAGUUGugGCAGUuga -5'
32813 3' -43.2 NC_007346.1 + 212412 0.66 1
Target:  5'- uGGUCAugu-UAUCGACugUGUUGACUg -3'
miRNA:   3'- -CUAGUuuauGUAGUUGugGCAGUUGA- -5'
32813 3' -43.2 NC_007346.1 + 167147 0.68 1
Target:  5'- --aUAAAUGCAUCGAUGCCGcCAuauACUc -3'
miRNA:   3'- cuaGUUUAUGUAGUUGUGGCaGU---UGA- -5'
32813 3' -43.2 NC_007346.1 + 30629 1.11 0.099697
Target:  5'- cGAUCAAAUACAUCAACACCGUCAACUa -3'
miRNA:   3'- -CUAGUUUAUGUAGUUGUGGCAGUUGA- -5'
32813 3' -43.2 NC_007346.1 + 174576 0.75 0.999856
Target:  5'- aGUCAAAUAC-UCGACACUGUUAuGCUa -3'
miRNA:   3'- cUAGUUUAUGuAGUUGUGGCAGU-UGA- -5'
32813 3' -43.2 NC_007346.1 + 378268 0.75 0.999856
Target:  5'- --aUggGUGCGUCAAUugCGUCAAUg -3'
miRNA:   3'- cuaGuuUAUGUAGUUGugGCAGUUGa -5'
32813 3' -43.2 NC_007346.1 + 115625 0.74 0.999935
Target:  5'- -uUCGAAUACAUaccCAGCACCGUCu--- -3'
miRNA:   3'- cuAGUUUAUGUA---GUUGUGGCAGuuga -5'
32813 3' -43.2 NC_007346.1 + 205437 0.67 1
Target:  5'- -uUCAAGUGCAUCGAU--UGUCAugUc -3'
miRNA:   3'- cuAGUUUAUGUAGUUGugGCAGUugA- -5'
32813 3' -43.2 NC_007346.1 + 350394 0.68 1
Target:  5'- uGUCAAAaucUGCAUCcACuuccguaucaaaACCGUCAACa -3'
miRNA:   3'- cUAGUUU---AUGUAGuUG------------UGGCAGUUGa -5'
32813 3' -43.2 NC_007346.1 + 385884 0.68 1
Target:  5'- --cCGAAUGCAaauauaaacuauUCGGCACaGUCGACUa -3'
miRNA:   3'- cuaGUUUAUGU------------AGUUGUGgCAGUUGA- -5'
32813 3' -43.2 NC_007346.1 + 188766 0.71 0.999999
Target:  5'- uGGUCAGAcaUGCAUUAAacCACCGUCAcCg -3'
miRNA:   3'- -CUAGUUU--AUGUAGUU--GUGGCAGUuGa -5'
32813 3' -43.2 NC_007346.1 + 139645 0.68 1
Target:  5'- --cCAAGUACAaUAACACCGaCGAUUg -3'
miRNA:   3'- cuaGUUUAUGUaGUUGUGGCaGUUGA- -5'
32813 3' -43.2 NC_007346.1 + 293393 0.69 1
Target:  5'- cGUCAGAUGaugaGACGCCGUCAGu- -3'
miRNA:   3'- cUAGUUUAUguagUUGUGGCAGUUga -5'
32813 3' -43.2 NC_007346.1 + 175853 0.68 1
Target:  5'- --aCAAAUACAUCAACAUgGUUugguguACUu -3'
miRNA:   3'- cuaGUUUAUGUAGUUGUGgCAGu-----UGA- -5'
32813 3' -43.2 NC_007346.1 + 233911 0.68 1
Target:  5'- uGAUCGAGUGCAUCAguuGgUGUCAugUu -3'
miRNA:   3'- -CUAGUUUAUGUAGUug-UgGCAGUugA- -5'
32813 3' -43.2 NC_007346.1 + 222158 0.67 1
Target:  5'- cGUCAAAUACAgccccacuguccgaaUCGGaAUCGUCAGCa -3'
miRNA:   3'- cUAGUUUAUGU---------------AGUUgUGGCAGUUGa -5'
32813 3' -43.2 NC_007346.1 + 300242 0.69 1
Target:  5'- --cCGAAUGCAUCuacGGCAUCGcCAACa -3'
miRNA:   3'- cuaGUUUAUGUAG---UUGUGGCaGUUGa -5'
32813 3' -43.2 NC_007346.1 + 48047 0.68 1
Target:  5'- cGUCGAAUGCAUCcacGACACgcaCGUCcACUu -3'
miRNA:   3'- cUAGUUUAUGUAG---UUGUG---GCAGuUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.