miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32823 5' -44.2 NC_007346.1 + 200595 0.66 1
Target:  5'- uACAUUUGGcCACcauGGUGGCAAUgaUGGc -3'
miRNA:   3'- -UGUAGACC-GUGuuuUCGUUGUUA--ACC- -5'
32823 5' -44.2 NC_007346.1 + 152943 0.66 1
Target:  5'- uGCAaaUGGCACAGAA-CAAUAgaucuAUUGGa -3'
miRNA:   3'- -UGUagACCGUGUUUUcGUUGU-----UAACC- -5'
32823 5' -44.2 NC_007346.1 + 45801 0.66 1
Target:  5'- uAUAUCUGGaaCGCAAu-GCGAUAAUacaUGGa -3'
miRNA:   3'- -UGUAGACC--GUGUUuuCGUUGUUA---ACC- -5'
32823 5' -44.2 NC_007346.1 + 248117 0.66 1
Target:  5'- -gGUCcGGCAUAcucGAGUAACAuUUGGu -3'
miRNA:   3'- ugUAGaCCGUGUu--UUCGUUGUuAACC- -5'
32823 5' -44.2 NC_007346.1 + 96241 0.66 1
Target:  5'- uUAUCUGGCAU---AGUAcuuGCAAUUGc -3'
miRNA:   3'- uGUAGACCGUGuuuUCGU---UGUUAACc -5'
32823 5' -44.2 NC_007346.1 + 135507 0.66 1
Target:  5'- gACGUC-GGCGCAGaAAGCAGgCAAUc-- -3'
miRNA:   3'- -UGUAGaCCGUGUU-UUCGUU-GUUAacc -5'
32823 5' -44.2 NC_007346.1 + 86529 0.66 1
Target:  5'- uACG-CUcGGCAUGGAGGaCGACGagGUUGGa -3'
miRNA:   3'- -UGUaGA-CCGUGUUUUC-GUUGU--UAACC- -5'
32823 5' -44.2 NC_007346.1 + 139230 0.66 1
Target:  5'- -----cGGCACGAAAGCAAgaAAUUGu -3'
miRNA:   3'- uguagaCCGUGUUUUCGUUg-UUAACc -5'
32823 5' -44.2 NC_007346.1 + 207012 0.66 1
Target:  5'- -aAUUUGGUGCAucgucgucGGCAACGAaUGGg -3'
miRNA:   3'- ugUAGACCGUGUuu------UCGUUGUUaACC- -5'
32823 5' -44.2 NC_007346.1 + 177242 0.66 1
Target:  5'- gACAUaCUGGaACAAAAGCGcaaagacgACAAaUGGc -3'
miRNA:   3'- -UGUA-GACCgUGUUUUCGU--------UGUUaACC- -5'
32823 5' -44.2 NC_007346.1 + 211428 0.66 1
Target:  5'- -uGUCUGGCACuacuuuucuGCAcuaACAGUUGc -3'
miRNA:   3'- ugUAGACCGUGuuuu-----CGU---UGUUAACc -5'
32823 5' -44.2 NC_007346.1 + 219402 0.66 1
Target:  5'- uGCAUauaUGGCAUAuggaaauAAAGCAACAGa--- -3'
miRNA:   3'- -UGUAg--ACCGUGU-------UUUCGUUGUUaacc -5'
32823 5' -44.2 NC_007346.1 + 239870 0.66 1
Target:  5'- aGCAga-GGCGCGAucuGCAAUAAUUGc -3'
miRNA:   3'- -UGUagaCCGUGUUuu-CGUUGUUAACc -5'
32823 5' -44.2 NC_007346.1 + 166112 0.66 1
Target:  5'- gUAUCUGGCACAu--GCcACAAg--- -3'
miRNA:   3'- uGUAGACCGUGUuuuCGuUGUUaacc -5'
32823 5' -44.2 NC_007346.1 + 380578 0.67 1
Target:  5'- ---gCUGuCAUggGGGCAAUAGUUGGu -3'
miRNA:   3'- uguaGACcGUGuuUUCGUUGUUAACC- -5'
32823 5' -44.2 NC_007346.1 + 201254 0.67 1
Target:  5'- aACAUUUGGUgGCGGuuGCAACGG-UGGu -3'
miRNA:   3'- -UGUAGACCG-UGUUuuCGUUGUUaACC- -5'
32823 5' -44.2 NC_007346.1 + 197883 0.67 1
Target:  5'- cAUAUUUGGCAUuuacuAGAGCGACAc---- -3'
miRNA:   3'- -UGUAGACCGUGu----UUUCGUUGUuaacc -5'
32823 5' -44.2 NC_007346.1 + 89044 0.67 1
Target:  5'- gACAUCUGGCACAuAGAaUAACAu---- -3'
miRNA:   3'- -UGUAGACCGUGU-UUUcGUUGUuaacc -5'
32823 5' -44.2 NC_007346.1 + 138172 0.67 1
Target:  5'- uGCGUCcggaccggGGCGCAcGAGCGGCGGa--- -3'
miRNA:   3'- -UGUAGa-------CCGUGUuUUCGUUGUUaacc -5'
32823 5' -44.2 NC_007346.1 + 31638 0.67 1
Target:  5'- uAUAUCUGGCGCGGAuguacauguGCAcgaGAUUGa -3'
miRNA:   3'- -UGUAGACCGUGUUUu--------CGUug-UUAACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.