Results 1 - 20 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32823 | 5' | -44.2 | NC_007346.1 | + | 189156 | 1.13 | 0.055936 |
Target: 5'- aACAUCUGGCACAAAAGCAACAAUUGGa -3' miRNA: 3'- -UGUAGACCGUGUUUUCGUUGUUAACC- -5' |
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32823 | 5' | -44.2 | NC_007346.1 | + | 241863 | 0.77 | 0.997554 |
Target: 5'- cGCGUCUGGCA-AAAAGCAAC---UGGc -3' miRNA: 3'- -UGUAGACCGUgUUUUCGUUGuuaACC- -5' |
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32823 | 5' | -44.2 | NC_007346.1 | + | 32874 | 0.75 | 0.99921 |
Target: 5'- gGCcUC-GGCAgCAAGAGCuGCAGUUGGg -3' miRNA: 3'- -UGuAGaCCGU-GUUUUCGuUGUUAACC- -5' |
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32823 | 5' | -44.2 | NC_007346.1 | + | 380342 | 0.74 | 0.999669 |
Target: 5'- uCAUCUGGCACGAAAuauGCAAaUGGu -3' miRNA: 3'- uGUAGACCGUGUUUUcguUGUUaACC- -5' |
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32823 | 5' | -44.2 | NC_007346.1 | + | 378595 | 0.73 | 0.999904 |
Target: 5'- aAC-UCUGGUACAuuuGGAGCGgacacacucACGAUUGGa -3' miRNA: 3'- -UGuAGACCGUGU---UUUCGU---------UGUUAACC- -5' |
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32823 | 5' | -44.2 | NC_007346.1 | + | 180164 | 0.72 | 0.999969 |
Target: 5'- -uGUCUGGC-CGAGAGUAcAgAGUUGGa -3' miRNA: 3'- ugUAGACCGuGUUUUCGU-UgUUAACC- -5' |
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32823 | 5' | -44.2 | NC_007346.1 | + | 195161 | 0.72 | 0.999969 |
Target: 5'- cCAUCUGGUGCA--GGCAuuACGGUUGu -3' miRNA: 3'- uGUAGACCGUGUuuUCGU--UGUUAACc -5' |
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32823 | 5' | -44.2 | NC_007346.1 | + | 372265 | 0.71 | 0.999994 |
Target: 5'- uGCAUaccaggcGGCACAAugcAAGCAGgCGAUUGGu -3' miRNA: 3'- -UGUAga-----CCGUGUU---UUCGUU-GUUAACC- -5' |
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32823 | 5' | -44.2 | NC_007346.1 | + | 361327 | 0.71 | 0.999994 |
Target: 5'- gGC-UCUGGgAUAuuGGCAAgAGUUGGu -3' miRNA: 3'- -UGuAGACCgUGUuuUCGUUgUUAACC- -5' |
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32823 | 5' | -44.2 | NC_007346.1 | + | 50960 | 0.71 | 0.999994 |
Target: 5'- aAUGUUUGGCAUuauaauAGCAACAcUUGGu -3' miRNA: 3'- -UGUAGACCGUGuuu---UCGUUGUuAACC- -5' |
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32823 | 5' | -44.2 | NC_007346.1 | + | 338893 | 0.71 | 0.999998 |
Target: 5'- --uUCUGGCACAAAgcaugcaccAGCcACAAcUGGu -3' miRNA: 3'- uguAGACCGUGUUU---------UCGuUGUUaACC- -5' |
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32823 | 5' | -44.2 | NC_007346.1 | + | 174688 | 0.71 | 0.999998 |
Target: 5'- aGCGUUUGGCuACAGugGAGCAaagaGCGAUuUGGu -3' miRNA: 3'- -UGUAGACCG-UGUU--UUCGU----UGUUA-ACC- -5' |
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32823 | 5' | -44.2 | NC_007346.1 | + | 114338 | 0.7 | 0.999999 |
Target: 5'- gACAUCguUGGCACcuauaccAAAGGCAGCAAa--- -3' miRNA: 3'- -UGUAG--ACCGUG-------UUUUCGUUGUUaacc -5' |
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32823 | 5' | -44.2 | NC_007346.1 | + | 227409 | 0.7 | 0.999999 |
Target: 5'- cACGUCUaGCAUAuu-GCAguGCAGUUGGc -3' miRNA: 3'- -UGUAGAcCGUGUuuuCGU--UGUUAACC- -5' |
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32823 | 5' | -44.2 | NC_007346.1 | + | 16069 | 0.7 | 0.999999 |
Target: 5'- uUAUUUGGUGCAAAAGCAuCAAUa-- -3' miRNA: 3'- uGUAGACCGUGUUUUCGUuGUUAacc -5' |
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32823 | 5' | -44.2 | NC_007346.1 | + | 112037 | 0.7 | 0.999999 |
Target: 5'- uACAUUUGGCAUGAAAGCAucccgucguguACAuaaaacUGGc -3' miRNA: 3'- -UGUAGACCGUGUUUUCGU-----------UGUua----ACC- -5' |
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32823 | 5' | -44.2 | NC_007346.1 | + | 274555 | 0.7 | 0.999999 |
Target: 5'- aGCAUg-GGCACcgcGAGGGCAACGGgcauUUGGg -3' miRNA: 3'- -UGUAgaCCGUG---UUUUCGUUGUU----AACC- -5' |
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32823 | 5' | -44.2 | NC_007346.1 | + | 59492 | 0.68 | 1 |
Target: 5'- gGCuagCUGGCuauCAAGuaucAGCuGGCAAUUGGg -3' miRNA: 3'- -UGua-GACCGu--GUUU----UCG-UUGUUAACC- -5' |
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32823 | 5' | -44.2 | NC_007346.1 | + | 380578 | 0.67 | 1 |
Target: 5'- ---gCUGuCAUggGGGCAAUAGUUGGu -3' miRNA: 3'- uguaGACcGUGuuUUCGUUGUUAACC- -5' |
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32823 | 5' | -44.2 | NC_007346.1 | + | 86529 | 0.66 | 1 |
Target: 5'- uACG-CUcGGCAUGGAGGaCGACGagGUUGGa -3' miRNA: 3'- -UGUaGA-CCGUGUUUUC-GUUGU--UAACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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