miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32823 5' -44.2 NC_007346.1 + 3126 0.67 1
Target:  5'- aACA-CgGGUACAAua-CAACAGUUGGa -3'
miRNA:   3'- -UGUaGaCCGUGUUuucGUUGUUAACC- -5'
32823 5' -44.2 NC_007346.1 + 16069 0.7 0.999999
Target:  5'- uUAUUUGGUGCAAAAGCAuCAAUa-- -3'
miRNA:   3'- uGUAGACCGUGUUUUCGUuGUUAacc -5'
32823 5' -44.2 NC_007346.1 + 27198 0.69 1
Target:  5'- uACAUCcGGuUACGAAGGC-GCAAUUGu -3'
miRNA:   3'- -UGUAGaCC-GUGUUUUCGuUGUUAACc -5'
32823 5' -44.2 NC_007346.1 + 31638 0.67 1
Target:  5'- uAUAUCUGGCGCGGAuguacauguGCAcgaGAUUGa -3'
miRNA:   3'- -UGUAGACCGUGUUUu--------CGUug-UUAACc -5'
32823 5' -44.2 NC_007346.1 + 32874 0.75 0.99921
Target:  5'- gGCcUC-GGCAgCAAGAGCuGCAGUUGGg -3'
miRNA:   3'- -UGuAGaCCGU-GUUUUCGuUGUUAACC- -5'
32823 5' -44.2 NC_007346.1 + 32921 0.69 1
Target:  5'- --uUCUGGUACAGuAGGC-ACAGUaaaUGGg -3'
miRNA:   3'- uguAGACCGUGUU-UUCGuUGUUA---ACC- -5'
32823 5' -44.2 NC_007346.1 + 33937 0.67 1
Target:  5'- gUAUCUGGUGCAAcuuGCAACAu---- -3'
miRNA:   3'- uGUAGACCGUGUUuu-CGUUGUuaacc -5'
32823 5' -44.2 NC_007346.1 + 45801 0.66 1
Target:  5'- uAUAUCUGGaaCGCAAu-GCGAUAAUacaUGGa -3'
miRNA:   3'- -UGUAGACC--GUGUUuuCGUUGUUA---ACC- -5'
32823 5' -44.2 NC_007346.1 + 50960 0.71 0.999994
Target:  5'- aAUGUUUGGCAUuauaauAGCAACAcUUGGu -3'
miRNA:   3'- -UGUAGACCGUGuuu---UCGUUGUuAACC- -5'
32823 5' -44.2 NC_007346.1 + 53478 0.67 1
Target:  5'- uCGUCUGGUACAuguGCAucgACAGUaaaGGa -3'
miRNA:   3'- uGUAGACCGUGUuuuCGU---UGUUAa--CC- -5'
32823 5' -44.2 NC_007346.1 + 58749 0.68 1
Target:  5'- -----aGGCGguGGAGCuGCAAUUGGa -3'
miRNA:   3'- uguagaCCGUguUUUCGuUGUUAACC- -5'
32823 5' -44.2 NC_007346.1 + 59492 0.68 1
Target:  5'- gGCuagCUGGCuauCAAGuaucAGCuGGCAAUUGGg -3'
miRNA:   3'- -UGua-GACCGu--GUUU----UCG-UUGUUAACC- -5'
32823 5' -44.2 NC_007346.1 + 62029 0.67 1
Target:  5'- cGCAaugUUGGCACGAc-GCAACAAUUu- -3'
miRNA:   3'- -UGUa--GACCGUGUUuuCGUUGUUAAcc -5'
32823 5' -44.2 NC_007346.1 + 73473 0.68 1
Target:  5'- -gAUUUGGUgccGCAAAGGCGAUugguggauaugGAUUGGg -3'
miRNA:   3'- ugUAGACCG---UGUUUUCGUUG-----------UUAACC- -5'
32823 5' -44.2 NC_007346.1 + 86529 0.66 1
Target:  5'- uACG-CUcGGCAUGGAGGaCGACGagGUUGGa -3'
miRNA:   3'- -UGUaGA-CCGUGUUUUC-GUUGU--UAACC- -5'
32823 5' -44.2 NC_007346.1 + 86700 0.69 1
Target:  5'- ---cCUGGCGCGAggccuucauGAGCu-CGGUUGGg -3'
miRNA:   3'- uguaGACCGUGUU---------UUCGuuGUUAACC- -5'
32823 5' -44.2 NC_007346.1 + 89044 0.67 1
Target:  5'- gACAUCUGGCACAuAGAaUAACAu---- -3'
miRNA:   3'- -UGUAGACCGUGU-UUUcGUUGUuaacc -5'
32823 5' -44.2 NC_007346.1 + 96241 0.66 1
Target:  5'- uUAUCUGGCAU---AGUAcuuGCAAUUGc -3'
miRNA:   3'- uGUAGACCGUGuuuUCGU---UGUUAACc -5'
32823 5' -44.2 NC_007346.1 + 110512 0.68 1
Target:  5'- uGCAUCgugguagcUGGUGCAAAAuguucggauggucGCAuuGCAAUUGGg -3'
miRNA:   3'- -UGUAG--------ACCGUGUUUU-------------CGU--UGUUAACC- -5'
32823 5' -44.2 NC_007346.1 + 112037 0.7 0.999999
Target:  5'- uACAUUUGGCAUGAAAGCAucccgucguguACAuaaaacUGGc -3'
miRNA:   3'- -UGUAGACCGUGUUUUCGU-----------UGUua----ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.