Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32831 | 3' | -46.9 | NC_007346.1 | + | 265202 | 0.66 | 1 |
Target: 5'- ---cGACGCgGUCGGcGUgUCGAUCa- -3' miRNA: 3'- gauuUUGCGgCAGCCaCA-AGUUAGag -5' |
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32831 | 3' | -46.9 | NC_007346.1 | + | 224431 | 0.66 | 1 |
Target: 5'- -aAAAACGcCCGUCGauUGUUCAAUaUCa -3' miRNA: 3'- gaUUUUGC-GGCAGCc-ACAAGUUAgAG- -5' |
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32831 | 3' | -46.9 | NC_007346.1 | + | 304954 | 0.66 | 1 |
Target: 5'- aUAcGACcCCGUaUGGUGgggcgUCGAUCUCg -3' miRNA: 3'- gAUuUUGcGGCA-GCCACa----AGUUAGAG- -5' |
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32831 | 3' | -46.9 | NC_007346.1 | + | 323647 | 0.66 | 1 |
Target: 5'- ---cAACGCCGUCGccGaUUCAuUCUCc -3' miRNA: 3'- gauuUUGCGGCAGCcaC-AAGUuAGAG- -5' |
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32831 | 3' | -46.9 | NC_007346.1 | + | 161266 | 0.66 | 1 |
Target: 5'- aCUGGAACGUCca-GGUGaUCAGUCa- -3' miRNA: 3'- -GAUUUUGCGGcagCCACaAGUUAGag -5' |
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32831 | 3' | -46.9 | NC_007346.1 | + | 275343 | 0.66 | 1 |
Target: 5'- gUGAGACGCCGcCGG-GUUUGAa--- -3' miRNA: 3'- gAUUUUGCGGCaGCCaCAAGUUagag -5' |
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32831 | 3' | -46.9 | NC_007346.1 | + | 254459 | 0.66 | 1 |
Target: 5'- aCUGAGcCGCCGUUGGUugGUUUu-UUUCa -3' miRNA: 3'- -GAUUUuGCGGCAGCCA--CAAGuuAGAG- -5' |
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32831 | 3' | -46.9 | NC_007346.1 | + | 314895 | 0.66 | 1 |
Target: 5'- ----cGCGaCCGUCGGUGUcaaauacgUAGUCUg -3' miRNA: 3'- gauuuUGC-GGCAGCCACAa-------GUUAGAg -5' |
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32831 | 3' | -46.9 | NC_007346.1 | + | 102729 | 0.66 | 1 |
Target: 5'- -cAAAACGUuuaCGUCGGcaacuaUUCAAUCUCc -3' miRNA: 3'- gaUUUUGCG---GCAGCCac----AAGUUAGAG- -5' |
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32831 | 3' | -46.9 | NC_007346.1 | + | 265141 | 0.67 | 0.999999 |
Target: 5'- ----cACGUCgGUCGGUGUgaaCAgcGUCUCg -3' miRNA: 3'- gauuuUGCGG-CAGCCACAa--GU--UAGAG- -5' |
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32831 | 3' | -46.9 | NC_007346.1 | + | 71969 | 0.68 | 0.999997 |
Target: 5'- gCUGuAGCGUCGUCGGUcgUCGuUCUUu -3' miRNA: 3'- -GAUuUUGCGGCAGCCAcaAGUuAGAG- -5' |
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32831 | 3' | -46.9 | NC_007346.1 | + | 275385 | 0.68 | 0.999996 |
Target: 5'- aUGAGACGCCGUguugUGGUGgcgggCAAUUa- -3' miRNA: 3'- gAUUUUGCGGCA----GCCACaa---GUUAGag -5' |
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32831 | 3' | -46.9 | NC_007346.1 | + | 87019 | 0.68 | 0.999996 |
Target: 5'- -aGGGACGCC-UCGGUGUacgCAccCUCa -3' miRNA: 3'- gaUUUUGCGGcAGCCACAa--GUuaGAG- -5' |
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32831 | 3' | -46.9 | NC_007346.1 | + | 244995 | 0.68 | 0.999992 |
Target: 5'- uUAGAACGgC-UUGGUGUgaucaccgguaUCAAUCUCa -3' miRNA: 3'- gAUUUUGCgGcAGCCACA-----------AGUUAGAG- -5' |
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32831 | 3' | -46.9 | NC_007346.1 | + | 259180 | 0.69 | 0.999965 |
Target: 5'- -aGAAucCGCCGUCGGgaUUCuAUCUCg -3' miRNA: 3'- gaUUUu-GCGGCAGCCacAAGuUAGAG- -5' |
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32831 | 3' | -46.9 | NC_007346.1 | + | 259043 | 0.69 | 0.999965 |
Target: 5'- -aGAAucCGCCGUCGGgaUUCuAUCUCg -3' miRNA: 3'- gaUUUu-GCGGCAGCCacAAGuUAGAG- -5' |
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32831 | 3' | -46.9 | NC_007346.1 | + | 256928 | 0.69 | 0.999965 |
Target: 5'- -aGAAucCGCCGUCGGgaUUCuAUCUCg -3' miRNA: 3'- gaUUUu-GCGGCAGCCacAAGuUAGAG- -5' |
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32831 | 3' | -46.9 | NC_007346.1 | + | 257666 | 0.69 | 0.999965 |
Target: 5'- -aGAAucCGCCGUCGGgaUUCuAUCUCg -3' miRNA: 3'- gaUUUu-GCGGCAGCCacAAGuUAGAG- -5' |
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32831 | 3' | -46.9 | NC_007346.1 | + | 258273 | 0.69 | 0.999965 |
Target: 5'- -aGAAucCGCCGUCGGgaUUCuAUCUCg -3' miRNA: 3'- gaUUUu-GCGGCAGCCacAAGuUAGAG- -5' |
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32831 | 3' | -46.9 | NC_007346.1 | + | 269965 | 0.74 | 0.996166 |
Target: 5'- -----gUGuuGUCGGUGUugUCGGUCUCg -3' miRNA: 3'- gauuuuGCggCAGCCACA--AGUUAGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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