Results 1 - 20 of 244 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32835 | 5' | -56 | NC_007346.1 | + | 198796 | 0.66 | 0.986707 |
Target: 5'- -aCCAUCGCCUCCACC---ACCAu-- -3' miRNA: 3'- acGGUGGUGGAGGUGGgcuUGGUuua -5' |
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32835 | 5' | -56 | NC_007346.1 | + | 57952 | 0.66 | 0.977298 |
Target: 5'- cGCCAaguCCGCCUCCAucgccgccuCCCucGCCAc-- -3' miRNA: 3'- aCGGU---GGUGGAGGU---------GGGcuUGGUuua -5' |
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32835 | 5' | -56 | NC_007346.1 | + | 178268 | 0.66 | 0.977298 |
Target: 5'- aGCCG-CACCUgCGCCCGcACCc--- -3' miRNA: 3'- aCGGUgGUGGAgGUGGGCuUGGuuua -5' |
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32835 | 5' | -56 | NC_007346.1 | + | 305801 | 0.66 | 0.977298 |
Target: 5'- cGCCAUCuCCUCCACC---GCCAu-- -3' miRNA: 3'- aCGGUGGuGGAGGUGGgcuUGGUuua -5' |
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32835 | 5' | -56 | NC_007346.1 | + | 349471 | 0.66 | 0.977298 |
Target: 5'- aGuCCACCACCaagUCCACC---ACCAAGUu -3' miRNA: 3'- aC-GGUGGUGG---AGGUGGgcuUGGUUUA- -5' |
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32835 | 5' | -56 | NC_007346.1 | + | 349531 | 0.66 | 0.977298 |
Target: 5'- aGuCCACCACCaagUCCACC---ACCAAGUu -3' miRNA: 3'- aC-GGUGGUGG---AGGUGGgcuUGGUUUA- -5' |
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32835 | 5' | -56 | NC_007346.1 | + | 307076 | 0.66 | 0.977298 |
Target: 5'- -aCCGCCAUCUCCACCgCc-ACCAAc- -3' miRNA: 3'- acGGUGGUGGAGGUGG-GcuUGGUUua -5' |
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32835 | 5' | -56 | NC_007346.1 | + | 307609 | 0.66 | 0.977298 |
Target: 5'- -aCCGCCAUCUCCACCgCc-ACCAAc- -3' miRNA: 3'- acGGUGGUGGAGGUGG-GcuUGGUUua -5' |
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32835 | 5' | -56 | NC_007346.1 | + | 307882 | 0.66 | 0.977298 |
Target: 5'- -aCCGCCAUCUCCACCgCc-ACCAAc- -3' miRNA: 3'- acGGUGGUGGAGGUGG-GcuUGGUUua -5' |
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32835 | 5' | -56 | NC_007346.1 | + | 199097 | 0.66 | 0.979488 |
Target: 5'- cGCCACCAUCaCC-CCCGccACCAu-- -3' miRNA: 3'- aCGGUGGUGGaGGuGGGCu-UGGUuua -5' |
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32835 | 5' | -56 | NC_007346.1 | + | 174753 | 0.66 | 0.983392 |
Target: 5'- aGCCAauaCugCUCaUACUCGGACCAc-- -3' miRNA: 3'- aCGGUg--GugGAG-GUGGGCUUGGUuua -5' |
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32835 | 5' | -56 | NC_007346.1 | + | 67092 | 0.66 | 0.983392 |
Target: 5'- aUGCUcCCACCUCCugCaauuuccaAACCAAAa -3' miRNA: 3'- -ACGGuGGUGGAGGugGgc------UUGGUUUa -5' |
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32835 | 5' | -56 | NC_007346.1 | + | 199069 | 0.66 | 0.986707 |
Target: 5'- -cCCACCACCaUCACCCccACCAc-- -3' miRNA: 3'- acGGUGGUGGaGGUGGGcuUGGUuua -5' |
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32835 | 5' | -56 | NC_007346.1 | + | 199138 | 0.66 | 0.986707 |
Target: 5'- -aCCAUCGCCUCCACC---ACCAu-- -3' miRNA: 3'- acGGUGGUGGAGGUGGgcuUGGUuua -5' |
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32835 | 5' | -56 | NC_007346.1 | + | 50421 | 0.66 | 0.986707 |
Target: 5'- cGCCACCACCaccaucgCCACCacca-CAAGUg -3' miRNA: 3'- aCGGUGGUGGa------GGUGGgcuugGUUUA- -5' |
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32835 | 5' | -56 | NC_007346.1 | + | 198959 | 0.66 | 0.986707 |
Target: 5'- cGCCAUCACCcCCACC---ACCAu-- -3' miRNA: 3'- aCGGUGGUGGaGGUGGgcuUGGUuua -5' |
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32835 | 5' | -56 | NC_007346.1 | + | 234562 | 0.66 | 0.986707 |
Target: 5'- --aCACUACCUCCACCUG--UCGAAa -3' miRNA: 3'- acgGUGGUGGAGGUGGGCuuGGUUUa -5' |
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32835 | 5' | -56 | NC_007346.1 | + | 392508 | 0.66 | 0.986707 |
Target: 5'- aGCCAgUCGCCgagCCAguCgCCGAGCCAGu- -3' miRNA: 3'- aCGGU-GGUGGa--GGU--G-GGCUUGGUUua -5' |
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32835 | 5' | -56 | NC_007346.1 | + | 87154 | 0.66 | 0.98512 |
Target: 5'- gGCCGCaC-CCUCCgccGCCC-AACCGAGc -3' miRNA: 3'- aCGGUG-GuGGAGG---UGGGcUUGGUUUa -5' |
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32835 | 5' | -56 | NC_007346.1 | + | 162395 | 0.66 | 0.98512 |
Target: 5'- -aCCGCCACUUCCAaaUGAAgCAAGUa -3' miRNA: 3'- acGGUGGUGGAGGUggGCUUgGUUUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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