miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32835 5' -56 NC_007346.1 + 50421 0.66 0.986707
Target:  5'- cGCCACCACCaccaucgCCACCacca-CAAGUg -3'
miRNA:   3'- aCGGUGGUGGa------GGUGGgcuugGUUUA- -5'
32835 5' -56 NC_007346.1 + 57102 0.78 0.520151
Target:  5'- -uCCACCACCaCCGCCUGGACCGGGa -3'
miRNA:   3'- acGGUGGUGGaGGUGGGCUUGGUUUa -5'
32835 5' -56 NC_007346.1 + 57149 0.67 0.969697
Target:  5'- uUGCUACCACCUgCACC---ACCAu-- -3'
miRNA:   3'- -ACGGUGGUGGAgGUGGgcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 57172 0.7 0.898732
Target:  5'- cGCCACCGCCagCAUCCccGCCAu-- -3'
miRNA:   3'- aCGGUGGUGGagGUGGGcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 57216 0.69 0.9317
Target:  5'- -aCCACCACUUCCACCaucACCAc-- -3'
miRNA:   3'- acGGUGGUGGAGGUGGgcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 57862 0.7 0.910579
Target:  5'- cGCCGCCAUUUCC-CCCGccgcCCAAu- -3'
miRNA:   3'- aCGGUGGUGGAGGuGGGCuu--GGUUua -5'
32835 5' -56 NC_007346.1 + 57952 0.66 0.977298
Target:  5'- cGCCAaguCCGCCUCCAucgccgccuCCCucGCCAc-- -3'
miRNA:   3'- aCGGU---GGUGGAGGU---------GGGcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 58491 0.73 0.764317
Target:  5'- cGCCACCGCCgucaccgaacccaCCACCCGcuCCAc-- -3'
miRNA:   3'- aCGGUGGUGGa------------GGUGGGCuuGGUuua -5'
32835 5' -56 NC_007346.1 + 58548 0.71 0.835503
Target:  5'- cGCCACCGaCUCCACCUccACCAu-- -3'
miRNA:   3'- aCGGUGGUgGAGGUGGGcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 58587 0.72 0.827567
Target:  5'- cGCCGCCAUCUCC-CCC--ACCAu-- -3'
miRNA:   3'- aCGGUGGUGGAGGuGGGcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 59219 0.72 0.802823
Target:  5'- cGCCACCAuccCCUCCACCaGGggcgcccccACCAAAa -3'
miRNA:   3'- aCGGUGGU---GGAGGUGGgCU---------UGGUUUa -5'
32835 5' -56 NC_007346.1 + 59666 0.67 0.97494
Target:  5'- cGCCACCACCaucuccUCCGCuuGGuaaACUGAu- -3'
miRNA:   3'- aCGGUGGUGG------AGGUGggCU---UGGUUua -5'
32835 5' -56 NC_007346.1 + 59711 0.69 0.926744
Target:  5'- cGCCACCACCgccgccaaauucUCCACCaccACCAu-- -3'
miRNA:   3'- aCGGUGGUGG------------AGGUGGgcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 59746 0.68 0.960434
Target:  5'- aUGuUCACCACCUUCACCUccGCCGc-- -3'
miRNA:   3'- -AC-GGUGGUGGAGGUGGGcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 60142 0.67 0.97494
Target:  5'- cGCCGCCGCCaucaCCACCUccuCCAu-- -3'
miRNA:   3'- aCGGUGGUGGa---GGUGGGcuuGGUuua -5'
32835 5' -56 NC_007346.1 + 60709 0.72 0.792563
Target:  5'- cGCCAUCACCUCCGCCUccgucugcuccACCAAu- -3'
miRNA:   3'- aCGGUGGUGGAGGUGGGcu---------UGGUUua -5'
32835 5' -56 NC_007346.1 + 60772 0.69 0.936441
Target:  5'- cGCCACCACCaUCACCaccACCAu-- -3'
miRNA:   3'- aCGGUGGUGGaGGUGGgcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 61581 0.71 0.850867
Target:  5'- cGCCAUUACCUCCACC---GCCAu-- -3'
miRNA:   3'- aCGGUGGUGGAGGUGGgcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 61614 0.73 0.776823
Target:  5'- cGgCGCCACCUCCGCCUucGCCu--- -3'
miRNA:   3'- aCgGUGGUGGAGGUGGGcuUGGuuua -5'
32835 5' -56 NC_007346.1 + 61670 0.69 0.9317
Target:  5'- -aCCAUCACCUCCACCUccACCu--- -3'
miRNA:   3'- acGGUGGUGGAGGUGGGcuUGGuuua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.