miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32835 5' -56 NC_007346.1 + 315623 1.06 0.01033
Target:  5'- gUGCCACCACCUCCACCCGAACCAAAUg -3'
miRNA:   3'- -ACGGUGGUGGAGGUGGGCUUGGUUUA- -5'
32835 5' -56 NC_007346.1 + 181552 0.8 0.389696
Target:  5'- cGCCACCcccACCUCCGCCCuuACCAAc- -3'
miRNA:   3'- aCGGUGG---UGGAGGUGGGcuUGGUUua -5'
32835 5' -56 NC_007346.1 + 315561 0.79 0.456741
Target:  5'- aGCCAgCCGCCguUCCAUCCGGACCAu-- -3'
miRNA:   3'- aCGGU-GGUGG--AGGUGGGCUUGGUuua -5'
32835 5' -56 NC_007346.1 + 309335 0.78 0.483439
Target:  5'- cGCCACCAUCUCCACC---ACCAAGUc -3'
miRNA:   3'- aCGGUGGUGGAGGUGGgcuUGGUUUA- -5'
32835 5' -56 NC_007346.1 + 306769 0.78 0.483439
Target:  5'- cGCCACCAUCUCCACC---ACCAAGUc -3'
miRNA:   3'- aCGGUGGUGGAGGUGGgcuUGGUUUA- -5'
32835 5' -56 NC_007346.1 + 198123 0.78 0.510864
Target:  5'- cGCCACCAUCUCCACCaccGCCAu-- -3'
miRNA:   3'- aCGGUGGUGGAGGUGGgcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 198480 0.78 0.510864
Target:  5'- cGCCACCAUCUCCACCaccGCCAu-- -3'
miRNA:   3'- aCGGUGGUGGAGGUGGgcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 198648 0.78 0.510864
Target:  5'- cGCCACCAUCUCCACCaccGCCAu-- -3'
miRNA:   3'- aCGGUGGUGGAGGUGGgcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 198357 0.78 0.510864
Target:  5'- cGCCACCAUCUCCACCaccGCCAu-- -3'
miRNA:   3'- aCGGUGGUGGAGGUGGgcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 198273 0.78 0.510864
Target:  5'- cGCCACCAUCUCCACCaccGCCAu-- -3'
miRNA:   3'- aCGGUGGUGGAGGUGGgcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 57102 0.78 0.520151
Target:  5'- -uCCACCACCaCCGCCUGGACCGGGa -3'
miRNA:   3'- acGGUGGUGGaGGUGGGCUUGGUUUa -5'
32835 5' -56 NC_007346.1 + 128017 0.78 0.520151
Target:  5'- cGCCGCCGCCUCCACCaUGGuggcaggcGCCAu-- -3'
miRNA:   3'- aCGGUGGUGGAGGUGG-GCU--------UGGUuua -5'
32835 5' -56 NC_007346.1 + 127966 0.78 0.520151
Target:  5'- cGCCGCCGCCUCCACCaUGGuggcaggcGCCAu-- -3'
miRNA:   3'- aCGGUGGUGGAGGUGG-GCU--------UGGUuua -5'
32835 5' -56 NC_007346.1 + 199037 0.77 0.538916
Target:  5'- cGCCACCAUCUCCACCaccACCAu-- -3'
miRNA:   3'- aCGGUGGUGGAGGUGGgcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 305888 0.77 0.548385
Target:  5'- cGCCGCCAUCUCCGCCUccACCGc-- -3'
miRNA:   3'- aCGGUGGUGGAGGUGGGcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 199187 0.77 0.548385
Target:  5'- cGCCACCAUCUCCACCaccACCAc-- -3'
miRNA:   3'- aCGGUGGUGGAGGUGGgcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 199247 0.77 0.548385
Target:  5'- cGCCACCAUCUCCGCCaccGCCAu-- -3'
miRNA:   3'- aCGGUGGUGGAGGUGGgcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 188795 0.76 0.586726
Target:  5'- cGCCGCCACCUCCAUCaccACCAc-- -3'
miRNA:   3'- aCGGUGGUGGAGGUGGgcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 272029 0.76 0.596399
Target:  5'- cGCCACCACCgCCACCUccGCCAc-- -3'
miRNA:   3'- aCGGUGGUGGaGGUGGGcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 188888 0.76 0.596399
Target:  5'- cGUCACCGCCUCCACCaucACCAc-- -3'
miRNA:   3'- aCGGUGGUGGAGGUGGgcuUGGUuua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.