Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33030 | 5' | -56.5 | NC_007497.1 | + | 15308 | 0.66 | 0.634155 |
Target: 5'- gCGUCCgCGGGAUGCG-CCacaGGCGCGg -3' miRNA: 3'- aGUAGG-GCCUUGCGCuGGc--CUGUGUg -5' |
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33030 | 5' | -56.5 | NC_007497.1 | + | 26173 | 0.66 | 0.634155 |
Target: 5'- ----gCCGGGAcCGuCGGCCGGAUAC-Ca -3' miRNA: 3'- aguagGGCCUU-GC-GCUGGCCUGUGuG- -5' |
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33030 | 5' | -56.5 | NC_007497.1 | + | 2539 | 0.66 | 0.623156 |
Target: 5'- ---gCCCGGGcguGCGCGccggcgGCCGcGGCGCAUc -3' miRNA: 3'- aguaGGGCCU---UGCGC------UGGC-CUGUGUG- -5' |
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33030 | 5' | -56.5 | NC_007497.1 | + | 2636 | 0.66 | 0.616561 |
Target: 5'- aCGcgCUCGGAAaucgcaaggaugcgcCGCGGCCGccGGCGCGCa -3' miRNA: 3'- aGUa-GGGCCUU---------------GCGCUGGC--CUGUGUG- -5' |
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33030 | 5' | -56.5 | NC_007497.1 | + | 24016 | 0.66 | 0.601193 |
Target: 5'- cUCGagCUCGucGCGCGGCCGGACcCGa -3' miRNA: 3'- -AGUa-GGGCcuUGCGCUGGCCUGuGUg -5' |
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33030 | 5' | -56.5 | NC_007497.1 | + | 31243 | 0.66 | 0.601193 |
Target: 5'- cCAUCgUCGGaAGCGCcGCCcagcaGGACACGCc -3' miRNA: 3'- aGUAG-GGCC-UUGCGcUGG-----CCUGUGUG- -5' |
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33030 | 5' | -56.5 | NC_007497.1 | + | 40635 | 0.66 | 0.590246 |
Target: 5'- --uUCCCGGuccAUGCG-CCGuGAUGCGCu -3' miRNA: 3'- aguAGGGCCu--UGCGCuGGC-CUGUGUG- -5' |
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33030 | 5' | -56.5 | NC_007497.1 | + | 32519 | 0.67 | 0.565216 |
Target: 5'- cCAUCuuGcGAccggcggccacgucACGgGGCCGGGCACGu -3' miRNA: 3'- aGUAGggC-CU--------------UGCgCUGGCCUGUGUg -5' |
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33030 | 5' | -56.5 | NC_007497.1 | + | 17631 | 0.67 | 0.55765 |
Target: 5'- gUCAcCUCGGcGCGCGGcuccggcuggcCCGGAUugGCu -3' miRNA: 3'- -AGUaGGGCCuUGCGCU-----------GGCCUGugUG- -5' |
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33030 | 5' | -56.5 | NC_007497.1 | + | 20852 | 0.67 | 0.546894 |
Target: 5'- aUCGUCcgaaCCGcGAgcACGCGcUCGGGCACAUg -3' miRNA: 3'- -AGUAG----GGC-CU--UGCGCuGGCCUGUGUG- -5' |
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33030 | 5' | -56.5 | NC_007497.1 | + | 23588 | 0.67 | 0.536203 |
Target: 5'- aUC-UCCUGGucGCGCuGCUGGGCGCGg -3' miRNA: 3'- -AGuAGGGCCu-UGCGcUGGCCUGUGUg -5' |
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33030 | 5' | -56.5 | NC_007497.1 | + | 4107 | 0.68 | 0.483987 |
Target: 5'- -gGUUCgGGGACGCGgcgGCCGaGACgGCACg -3' miRNA: 3'- agUAGGgCCUUGCGC---UGGC-CUG-UGUG- -5' |
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33030 | 5' | -56.5 | NC_007497.1 | + | 34946 | 0.68 | 0.482966 |
Target: 5'- -aAUCgCCGGGACgccguauGCGGCCGuGAuCGCGCg -3' miRNA: 3'- agUAG-GGCCUUG-------CGCUGGC-CU-GUGUG- -5' |
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33030 | 5' | -56.5 | NC_007497.1 | + | 34592 | 0.69 | 0.453849 |
Target: 5'- ----gCCGuuuGCGCGACCGcGGCACGCu -3' miRNA: 3'- aguagGGCcu-UGCGCUGGC-CUGUGUG- -5' |
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33030 | 5' | -56.5 | NC_007497.1 | + | 23192 | 0.69 | 0.453849 |
Target: 5'- gCAUCgCCGGccagcagugcgAGCGCGACUacGACGCGCu -3' miRNA: 3'- aGUAG-GGCC-----------UUGCGCUGGc-CUGUGUG- -5' |
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33030 | 5' | -56.5 | NC_007497.1 | + | 32832 | 0.69 | 0.42476 |
Target: 5'- -aGUCcgCCGaGAACGCcGCUGGGCGCGCc -3' miRNA: 3'- agUAG--GGC-CUUGCGcUGGCCUGUGUG- -5' |
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33030 | 5' | -56.5 | NC_007497.1 | + | 21697 | 0.69 | 0.415313 |
Target: 5'- aUC-UUCCGGAACGUGuCCGcgacgagcuGACGCGCu -3' miRNA: 3'- -AGuAGGGCCUUGCGCuGGC---------CUGUGUG- -5' |
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33030 | 5' | -56.5 | NC_007497.1 | + | 16234 | 0.7 | 0.370077 |
Target: 5'- cCGUCUCGGuGCGUG-CCGGGaucaGCGCa -3' miRNA: 3'- aGUAGGGCCuUGCGCuGGCCUg---UGUG- -5' |
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33030 | 5' | -56.5 | NC_007497.1 | + | 23875 | 0.7 | 0.361443 |
Target: 5'- cUCAUCCgGcGugaAGCGCuGGCCGGcGCGCACg -3' miRNA: 3'- -AGUAGGgC-C---UUGCG-CUGGCC-UGUGUG- -5' |
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33030 | 5' | -56.5 | NC_007497.1 | + | 1782 | 0.7 | 0.360587 |
Target: 5'- -gAUCCCcgcuGggUGCGGCCGGgagugcuGCGCACg -3' miRNA: 3'- agUAGGGc---CuuGCGCUGGCC-------UGUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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