Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33030 | 5' | -56.5 | NC_007497.1 | + | 32656 | 0.71 | 0.344599 |
Target: 5'- uUCGguuggCUCGGcAAUGCGAUCGGACuugGCGCg -3' miRNA: 3'- -AGUa----GGGCC-UUGCGCUGGCCUG---UGUG- -5' |
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33030 | 5' | -56.5 | NC_007497.1 | + | 38589 | 0.71 | 0.31263 |
Target: 5'- cUCAaacUCCCGGAaugauucgAUGCGGCCGcaacaGCGCACg -3' miRNA: 3'- -AGU---AGGGCCU--------UGCGCUGGCc----UGUGUG- -5' |
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33030 | 5' | -56.5 | NC_007497.1 | + | 24629 | 0.72 | 0.282961 |
Target: 5'- aCAUCCCgGGAAC-CGGCUGGGCAg-- -3' miRNA: 3'- aGUAGGG-CCUUGcGCUGGCCUGUgug -5' |
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33030 | 5' | -56.5 | NC_007497.1 | + | 11672 | 0.73 | 0.264898 |
Target: 5'- gCggCCCGGAAC-CGgcacggccgggaguaGCCGGGCGCGCg -3' miRNA: 3'- aGuaGGGCCUUGcGC---------------UGGCCUGUGUG- -5' |
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33030 | 5' | -56.5 | NC_007497.1 | + | 41325 | 0.75 | 0.181336 |
Target: 5'- -gGUUCCGGAGCugaucgGCGACCGGAUcgucaGCGCg -3' miRNA: 3'- agUAGGGCCUUG------CGCUGGCCUG-----UGUG- -5' |
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33030 | 5' | -56.5 | NC_007497.1 | + | 15250 | 0.76 | 0.162663 |
Target: 5'- gCAUCCCGcGGACGcCGGCCGagcgccgcgaGGCGCGCa -3' miRNA: 3'- aGUAGGGC-CUUGC-GCUGGC----------CUGUGUG- -5' |
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33030 | 5' | -56.5 | NC_007497.1 | + | 38140 | 0.8 | 0.085384 |
Target: 5'- cUCGUCCCGGAucacguucgcGCcgGCGACCGuGGCGCGCc -3' miRNA: 3'- -AGUAGGGCCU----------UG--CGCUGGC-CUGUGUG- -5' |
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33030 | 5' | -56.5 | NC_007497.1 | + | 1821 | 0.93 | 0.010314 |
Target: 5'- uUCAUCCCGGAACG-GcACCGGACACACa -3' miRNA: 3'- -AGUAGGGCCUUGCgC-UGGCCUGUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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