Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33032 | 3' | -58.6 | NC_007497.1 | + | 2525 | 1.08 | 0.000544 |
Target: 5'- gCGUGAUGGCGCGUCGCCGCGCGAACGc -3' miRNA: 3'- -GCACUACCGCGCAGCGGCGCGCUUGC- -5' |
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33032 | 3' | -58.6 | NC_007497.1 | + | 34095 | 0.75 | 0.145087 |
Target: 5'- ------cGCGCGUCGCCGCGaCGAACa -3' miRNA: 3'- gcacuacCGCGCAGCGGCGC-GCUUGc -5' |
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33032 | 3' | -58.6 | NC_007497.1 | + | 32701 | 0.74 | 0.153149 |
Target: 5'- gCG-GAUcucGCGCGguUCGCUGCGCGAGCGg -3' miRNA: 3'- -GCaCUAc--CGCGC--AGCGGCGCGCUUGC- -5' |
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33032 | 3' | -58.6 | NC_007497.1 | + | 33533 | 0.73 | 0.205116 |
Target: 5'- --cGAUGGCGCaGUCgGCCGCGCaGGucGCGc -3' miRNA: 3'- gcaCUACCGCG-CAG-CGGCGCG-CU--UGC- -5' |
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33032 | 3' | -58.6 | NC_007497.1 | + | 38225 | 0.72 | 0.21607 |
Target: 5'- -----aGGCGCGccacggUCGCCgGCGCGAACGu -3' miRNA: 3'- gcacuaCCGCGC------AGCGG-CGCGCUUGC- -5' |
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33032 | 3' | -58.6 | NC_007497.1 | + | 8044 | 0.72 | 0.21607 |
Target: 5'- gGUGAcaUGGaUGCGUUGCUGCGCGGccuGCu -3' miRNA: 3'- gCACU--ACC-GCGCAGCGGCGCGCU---UGc -5' |
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33032 | 3' | -58.6 | NC_007497.1 | + | 24280 | 0.71 | 0.25452 |
Target: 5'- aCGUGGggagcguuacugccgUGGCGuCGUCGCUGaCGCuGACGg -3' miRNA: 3'- -GCACU---------------ACCGC-GCAGCGGC-GCGcUUGC- -5' |
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33032 | 3' | -58.6 | NC_007497.1 | + | 14281 | 0.71 | 0.271679 |
Target: 5'- gCGUGGcagcUGGCgcaugcacuGCGUCGCCa-GCGAGCGg -3' miRNA: 3'- -GCACU----ACCG---------CGCAGCGGcgCGCUUGC- -5' |
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33032 | 3' | -58.6 | NC_007497.1 | + | 34923 | 0.7 | 0.314799 |
Target: 5'- cCGUGAUcGCGCGcgagaccgCgGCCGCGCaGGGCGa -3' miRNA: 3'- -GCACUAcCGCGCa-------G-CGGCGCG-CUUGC- -5' |
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33032 | 3' | -58.6 | NC_007497.1 | + | 23931 | 0.69 | 0.338227 |
Target: 5'- cCGUGAUGaucccgauCGgGUCgGCCGCGCGA-CGa -3' miRNA: 3'- -GCACUACc-------GCgCAG-CGGCGCGCUuGC- -5' |
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33032 | 3' | -58.6 | NC_007497.1 | + | 32870 | 0.69 | 0.346312 |
Target: 5'- gCGUGuUGGCGCGa-GCCGgGCGcuCGc -3' miRNA: 3'- -GCACuACCGCGCagCGGCgCGCuuGC- -5' |
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33032 | 3' | -58.6 | NC_007497.1 | + | 5590 | 0.69 | 0.346312 |
Target: 5'- -cUGAUGGCGC-UCGCCGacuaCGCaAACGa -3' miRNA: 3'- gcACUACCGCGcAGCGGC----GCGcUUGC- -5' |
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33032 | 3' | -58.6 | NC_007497.1 | + | 32634 | 0.69 | 0.354536 |
Target: 5'- uCG-GAcuUGGCGCGUCuGCCGCagGUGGAUa -3' miRNA: 3'- -GCaCU--ACCGCGCAG-CGGCG--CGCUUGc -5' |
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33032 | 3' | -58.6 | NC_007497.1 | + | 6896 | 0.68 | 0.371392 |
Target: 5'- --gGAUGGCGCGuucgcaaucacUCGCgGCGaaGAGCGg -3' miRNA: 3'- gcaCUACCGCGC-----------AGCGgCGCg-CUUGC- -5' |
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33032 | 3' | -58.6 | NC_007497.1 | + | 40658 | 0.68 | 0.380022 |
Target: 5'- gCGUcGAUGGCGCG-CGCCGgGUa---- -3' miRNA: 3'- -GCA-CUACCGCGCaGCGGCgCGcuugc -5' |
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33032 | 3' | -58.6 | NC_007497.1 | + | 40134 | 0.68 | 0.406706 |
Target: 5'- aCGUGAagcgcGGCGaCGUgcagGCCGCGCuGAACa -3' miRNA: 3'- -GCACUa----CCGC-GCAg---CGGCGCG-CUUGc -5' |
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33032 | 3' | -58.6 | NC_007497.1 | + | 17582 | 0.68 | 0.406706 |
Target: 5'- -----cGGCGCGUgcaaguuCCGCGCGGGCGg -3' miRNA: 3'- gcacuaCCGCGCAgc-----GGCGCGCUUGC- -5' |
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33032 | 3' | -58.6 | NC_007497.1 | + | 33181 | 0.68 | 0.406706 |
Target: 5'- -----cGGCGCGaUCguagGCCGCGCGAAuCGa -3' miRNA: 3'- gcacuaCCGCGC-AG----CGGCGCGCUU-GC- -5' |
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33032 | 3' | -58.6 | NC_007497.1 | + | 8705 | 0.68 | 0.407616 |
Target: 5'- aCGUGAagcggaagcgggcggGGCGCGUCgGCCGCcCGGuCGu -3' miRNA: 3'- -GCACUa--------------CCGCGCAG-CGGCGcGCUuGC- -5' |
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33032 | 3' | -58.6 | NC_007497.1 | + | 23743 | 0.68 | 0.415858 |
Target: 5'- --gGAagGGCGCGU-GCCGUGCGcucAACGa -3' miRNA: 3'- gcaCUa-CCGCGCAgCGGCGCGC---UUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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