Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33032 | 3' | -58.6 | NC_007497.1 | + | 2435 | 0.67 | 0.425136 |
Target: 5'- aGUGccGGUGCGcCGCUGgGCGuucgcGCGg -3' miRNA: 3'- gCACuaCCGCGCaGCGGCgCGCu----UGC- -5' |
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33032 | 3' | -58.6 | NC_007497.1 | + | 2525 | 1.08 | 0.000544 |
Target: 5'- gCGUGAUGGCGCGUCGCCGCGCGAACGc -3' miRNA: 3'- -GCACUACCGCGCAGCGGCGCGCUUGC- -5' |
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33032 | 3' | -58.6 | NC_007497.1 | + | 5590 | 0.69 | 0.346312 |
Target: 5'- -cUGAUGGCGC-UCGCCGacuaCGCaAACGa -3' miRNA: 3'- gcACUACCGCGcAGCGGC----GCGcUUGC- -5' |
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33032 | 3' | -58.6 | NC_007497.1 | + | 6204 | 0.66 | 0.503468 |
Target: 5'- cCG-GAuuuUGGagGCGUgGgCGCGCGAGCGc -3' miRNA: 3'- -GCaCU---ACCg-CGCAgCgGCGCGCUUGC- -5' |
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33032 | 3' | -58.6 | NC_007497.1 | + | 6896 | 0.68 | 0.371392 |
Target: 5'- --gGAUGGCGCGuucgcaaucacUCGCgGCGaaGAGCGg -3' miRNA: 3'- gcaCUACCGCGC-----------AGCGgCGCg-CUUGC- -5' |
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33032 | 3' | -58.6 | NC_007497.1 | + | 8044 | 0.72 | 0.21607 |
Target: 5'- gGUGAcaUGGaUGCGUUGCUGCGCGGccuGCu -3' miRNA: 3'- gCACU--ACC-GCGCAGCGGCGCGCU---UGc -5' |
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33032 | 3' | -58.6 | NC_007497.1 | + | 8705 | 0.68 | 0.407616 |
Target: 5'- aCGUGAagcggaagcgggcggGGCGCGUCgGCCGCcCGGuCGu -3' miRNA: 3'- -GCACUa--------------CCGCGCAG-CGGCGcGCUuGC- -5' |
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33032 | 3' | -58.6 | NC_007497.1 | + | 12790 | 0.67 | 0.473293 |
Target: 5'- aGUGAgGGCGCcUCaaGCCGgCGCG-GCGg -3' miRNA: 3'- gCACUaCCGCGcAG--CGGC-GCGCuUGC- -5' |
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33032 | 3' | -58.6 | NC_007497.1 | + | 14281 | 0.71 | 0.271679 |
Target: 5'- gCGUGGcagcUGGCgcaugcacuGCGUCGCCa-GCGAGCGg -3' miRNA: 3'- -GCACU----ACCG---------CGCAGCGGcgCGCUUGC- -5' |
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33032 | 3' | -58.6 | NC_007497.1 | + | 17291 | 0.66 | 0.483253 |
Target: 5'- -----cGGCccgaGCGUCuGCCuGCGCGGGCGg -3' miRNA: 3'- gcacuaCCG----CGCAG-CGG-CGCGCUUGC- -5' |
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33032 | 3' | -58.6 | NC_007497.1 | + | 17582 | 0.68 | 0.406706 |
Target: 5'- -----cGGCGCGUgcaaguuCCGCGCGGGCGg -3' miRNA: 3'- gcacuaCCGCGCAgc-----GGCGCGCUUGC- -5' |
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33032 | 3' | -58.6 | NC_007497.1 | + | 17769 | 0.66 | 0.534449 |
Target: 5'- uCGUGAagGGCGauucCGUCGCGCGAu-- -3' miRNA: 3'- -GCACUa-CCGCgca-GCGGCGCGCUugc -5' |
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33032 | 3' | -58.6 | NC_007497.1 | + | 23259 | 0.66 | 0.513713 |
Target: 5'- gCGgGAUGGCGgG-CgGCUGCGaCGAGCu -3' miRNA: 3'- -GCaCUACCGCgCaG-CGGCGC-GCUUGc -5' |
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33032 | 3' | -58.6 | NC_007497.1 | + | 23743 | 0.68 | 0.415858 |
Target: 5'- --gGAagGGCGCGU-GCCGUGCGcucAACGa -3' miRNA: 3'- gcaCUa-CCGCGCAgCGGCGCGC---UUGC- -5' |
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33032 | 3' | -58.6 | NC_007497.1 | + | 23931 | 0.69 | 0.338227 |
Target: 5'- cCGUGAUGaucccgauCGgGUCgGCCGCGCGA-CGa -3' miRNA: 3'- -GCACUACc-------GCgCAG-CGGCGCGCUuGC- -5' |
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33032 | 3' | -58.6 | NC_007497.1 | + | 24280 | 0.71 | 0.25452 |
Target: 5'- aCGUGGggagcguuacugccgUGGCGuCGUCGCUGaCGCuGACGg -3' miRNA: 3'- -GCACU---------------ACCGC-GCAGCGGC-GCGcUUGC- -5' |
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33032 | 3' | -58.6 | NC_007497.1 | + | 26566 | 0.66 | 0.503468 |
Target: 5'- aCGUGAUGaacGUGaCGUCGCUgccggccgucaGCGCGGaaACGa -3' miRNA: 3'- -GCACUAC---CGC-GCAGCGG-----------CGCGCU--UGC- -5' |
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33032 | 3' | -58.6 | NC_007497.1 | + | 28911 | 0.66 | 0.524041 |
Target: 5'- uCGUGuuUGaGCaacCGUCGCUGuCGCGAugGg -3' miRNA: 3'- -GCACu-AC-CGc--GCAGCGGC-GCGCUugC- -5' |
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33032 | 3' | -58.6 | NC_007497.1 | + | 31398 | 0.66 | 0.513713 |
Target: 5'- gCGUGAaauacUGGCaCGUUGCagaGCGCGGGa- -3' miRNA: 3'- -GCACU-----ACCGcGCAGCGg--CGCGCUUgc -5' |
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33032 | 3' | -58.6 | NC_007497.1 | + | 32634 | 0.69 | 0.354536 |
Target: 5'- uCG-GAcuUGGCGCGUCuGCCGCagGUGGAUa -3' miRNA: 3'- -GCaCU--ACCGCGCAG-CGGCG--CGCUUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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