miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33032 3' -58.6 NC_007497.1 + 34095 0.75 0.145087
Target:  5'- ------cGCGCGUCGCCGCGaCGAACa -3'
miRNA:   3'- gcacuacCGCGCAGCGGCGC-GCUUGc -5'
33032 3' -58.6 NC_007497.1 + 23259 0.66 0.513713
Target:  5'- gCGgGAUGGCGgG-CgGCUGCGaCGAGCu -3'
miRNA:   3'- -GCaCUACCGCgCaG-CGGCGC-GCUUGc -5'
33032 3' -58.6 NC_007497.1 + 12790 0.67 0.473293
Target:  5'- aGUGAgGGCGCcUCaaGCCGgCGCG-GCGg -3'
miRNA:   3'- gCACUaCCGCGcAG--CGGC-GCGCuUGC- -5'
33032 3' -58.6 NC_007497.1 + 2435 0.67 0.425136
Target:  5'- aGUGccGGUGCGcCGCUGgGCGuucgcGCGg -3'
miRNA:   3'- gCACuaCCGCGCaGCGGCgCGCu----UGC- -5'
33032 3' -58.6 NC_007497.1 + 33181 0.68 0.406706
Target:  5'- -----cGGCGCGaUCguagGCCGCGCGAAuCGa -3'
miRNA:   3'- gcacuaCCGCGC-AG----CGGCGCGCUU-GC- -5'
33032 3' -58.6 NC_007497.1 + 23931 0.69 0.338227
Target:  5'- cCGUGAUGaucccgauCGgGUCgGCCGCGCGA-CGa -3'
miRNA:   3'- -GCACUACc-------GCgCAG-CGGCGCGCUuGC- -5'
33032 3' -58.6 NC_007497.1 + 14281 0.71 0.271679
Target:  5'- gCGUGGcagcUGGCgcaugcacuGCGUCGCCa-GCGAGCGg -3'
miRNA:   3'- -GCACU----ACCG---------CGCAGCGGcgCGCUUGC- -5'
33032 3' -58.6 NC_007497.1 + 40134 0.68 0.406706
Target:  5'- aCGUGAagcgcGGCGaCGUgcagGCCGCGCuGAACa -3'
miRNA:   3'- -GCACUa----CCGC-GCAg---CGGCGCG-CUUGc -5'
33032 3' -58.6 NC_007497.1 + 40658 0.68 0.380022
Target:  5'- gCGUcGAUGGCGCG-CGCCGgGUa---- -3'
miRNA:   3'- -GCA-CUACCGCGCaGCGGCgCGcuugc -5'
33032 3' -58.6 NC_007497.1 + 6896 0.68 0.371392
Target:  5'- --gGAUGGCGCGuucgcaaucacUCGCgGCGaaGAGCGg -3'
miRNA:   3'- gcaCUACCGCGC-----------AGCGgCGCg-CUUGC- -5'
33032 3' -58.6 NC_007497.1 + 32634 0.69 0.354536
Target:  5'- uCG-GAcuUGGCGCGUCuGCCGCagGUGGAUa -3'
miRNA:   3'- -GCaCU--ACCGCGCAG-CGGCG--CGCUUGc -5'
33032 3' -58.6 NC_007497.1 + 5590 0.69 0.346312
Target:  5'- -cUGAUGGCGC-UCGCCGacuaCGCaAACGa -3'
miRNA:   3'- gcACUACCGCGcAGCGGC----GCGcUUGC- -5'
33032 3' -58.6 NC_007497.1 + 32870 0.69 0.346312
Target:  5'- gCGUGuUGGCGCGa-GCCGgGCGcuCGc -3'
miRNA:   3'- -GCACuACCGCGCagCGGCgCGCuuGC- -5'
33032 3' -58.6 NC_007497.1 + 34923 0.7 0.314799
Target:  5'- cCGUGAUcGCGCGcgagaccgCgGCCGCGCaGGGCGa -3'
miRNA:   3'- -GCACUAcCGCGCa-------G-CGGCGCG-CUUGC- -5'
33032 3' -58.6 NC_007497.1 + 24280 0.71 0.25452
Target:  5'- aCGUGGggagcguuacugccgUGGCGuCGUCGCUGaCGCuGACGg -3'
miRNA:   3'- -GCACU---------------ACCGC-GCAGCGGC-GCGcUUGC- -5'
33032 3' -58.6 NC_007497.1 + 38225 0.72 0.21607
Target:  5'- -----aGGCGCGccacggUCGCCgGCGCGAACGu -3'
miRNA:   3'- gcacuaCCGCGC------AGCGG-CGCGCUUGC- -5'
33032 3' -58.6 NC_007497.1 + 8044 0.72 0.21607
Target:  5'- gGUGAcaUGGaUGCGUUGCUGCGCGGccuGCu -3'
miRNA:   3'- gCACU--ACC-GCGCAGCGGCGCGCU---UGc -5'
33032 3' -58.6 NC_007497.1 + 33533 0.73 0.205116
Target:  5'- --cGAUGGCGCaGUCgGCCGCGCaGGucGCGc -3'
miRNA:   3'- gcaCUACCGCG-CAG-CGGCGCG-CU--UGC- -5'
33032 3' -58.6 NC_007497.1 + 32701 0.74 0.153149
Target:  5'- gCG-GAUcucGCGCGguUCGCUGCGCGAGCGg -3'
miRNA:   3'- -GCaCUAc--CGCGC--AGCGGCGCGCUUGC- -5'
33032 3' -58.6 NC_007497.1 + 17769 0.66 0.534449
Target:  5'- uCGUGAagGGCGauucCGUCGCGCGAu-- -3'
miRNA:   3'- -GCACUa-CCGCgca-GCGGCGCGCUugc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.