miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33032 5' -57.3 NC_007497.1 + 2549 0.65 0.529768
Target:  5'- gCGCGCCGGCGgccgcggcgcauccUUGCgauuuccGAGCGCGuagauGCGUg -3'
miRNA:   3'- -GCGUGGCCGU--------------GACGa------UUCGCGC-----UGUA- -5'
33032 5' -57.3 NC_007497.1 + 27176 0.66 0.526534
Target:  5'- gCGCAUCGGCggccguauccgcuccGCUGCc-GGCGCGGu-- -3'
miRNA:   3'- -GCGUGGCCG---------------UGACGauUCGCGCUgua -5'
33032 5' -57.3 NC_007497.1 + 44552 0.66 0.522235
Target:  5'- gGCGCCGGC--UGCUGAGacugauCGcCGGCAUu -3'
miRNA:   3'- gCGUGGCCGugACGAUUC------GC-GCUGUA- -5'
33032 5' -57.3 NC_007497.1 + 31391 0.66 0.500951
Target:  5'- -aUACUGGCACguUGCaGAGCGCGGgAa -3'
miRNA:   3'- gcGUGGCCGUG--ACGaUUCGCGCUgUa -5'
33032 5' -57.3 NC_007497.1 + 19872 0.66 0.489408
Target:  5'- uGCACCGcGCugaucugGCUGUUGaucGGUGCGACc- -3'
miRNA:   3'- gCGUGGC-CG-------UGACGAU---UCGCGCUGua -5'
33032 5' -57.3 NC_007497.1 + 27095 0.66 0.480057
Target:  5'- cCGCGCCGGCA--GCgGAGCG-GAUAc -3'
miRNA:   3'- -GCGUGGCCGUgaCGaUUCGCgCUGUa -5'
33032 5' -57.3 NC_007497.1 + 4193 0.67 0.469771
Target:  5'- cCGCGagCGGUuuaugGCUGCgguGCGCGACGc -3'
miRNA:   3'- -GCGUg-GCCG-----UGACGauuCGCGCUGUa -5'
33032 5' -57.3 NC_007497.1 + 2490 0.67 0.449544
Target:  5'- uCGUcCgGGCGgUGCUucuucAGGUGCGACAUg -3'
miRNA:   3'- -GCGuGgCCGUgACGA-----UUCGCGCUGUA- -5'
33032 5' -57.3 NC_007497.1 + 5818 0.67 0.448545
Target:  5'- cCGC-CCGGCAgCUucgucgGCUgacgagcGAGCGCGGCGa -3'
miRNA:   3'- -GCGuGGCCGU-GA------CGA-------UUCGCGCUGUa -5'
33032 5' -57.3 NC_007497.1 + 38050 0.67 0.428833
Target:  5'- uGCGauacCCGGCGaauccuuCUGCuUGAGCGCGGCc- -3'
miRNA:   3'- gCGU----GGCCGU-------GACG-AUUCGCGCUGua -5'
33032 5' -57.3 NC_007497.1 + 24504 0.68 0.410588
Target:  5'- gCGauaACUGGCGCUGCguacGCGCGGgAUu -3'
miRNA:   3'- -GCg--UGGCCGUGACGauu-CGCGCUgUA- -5'
33032 5' -57.3 NC_007497.1 + 39275 0.68 0.404927
Target:  5'- gGCGgCGGC-CUGCUGAauccggagccgaugcGCGCGAUg- -3'
miRNA:   3'- gCGUgGCCGuGACGAUU---------------CGCGCUGua -5'
33032 5' -57.3 NC_007497.1 + 23189 0.68 0.401181
Target:  5'- uCGCcgGCCaGCAgUGC-GAGCGCGACu- -3'
miRNA:   3'- -GCG--UGGcCGUgACGaUUCGCGCUGua -5'
33032 5' -57.3 NC_007497.1 + 473 0.68 0.401181
Target:  5'- gCGCGCUGGCAagaGCagcAGUGCGGCGc -3'
miRNA:   3'- -GCGUGGCCGUga-CGau-UCGCGCUGUa -5'
33032 5' -57.3 NC_007497.1 + 36536 0.68 0.391912
Target:  5'- uGaCACUGGCGCUGC--GGCuCGGCAg -3'
miRNA:   3'- gC-GUGGCCGUGACGauUCGcGCUGUa -5'
33032 5' -57.3 NC_007497.1 + 3388 0.68 0.391912
Target:  5'- gCGCGCgGGCGauaUGCcuuGCGCGGCu- -3'
miRNA:   3'- -GCGUGgCCGUg--ACGauuCGCGCUGua -5'
33032 5' -57.3 NC_007497.1 + 34565 0.68 0.382784
Target:  5'- gGCAuccugacgaccgUCGGCACggugGCgcuuGGCGCGGCAg -3'
miRNA:   3'- gCGU------------GGCCGUGa---CGau--UCGCGCUGUa -5'
33032 5' -57.3 NC_007497.1 + 23121 0.68 0.382784
Target:  5'- uCGCGCUcGCACUGCU-GGC-CGGCGa -3'
miRNA:   3'- -GCGUGGcCGUGACGAuUCGcGCUGUa -5'
33032 5' -57.3 NC_007497.1 + 41170 0.68 0.382784
Target:  5'- gGCACCGGCgucaccGCgaaGCggaucAGCGCGGCGc -3'
miRNA:   3'- gCGUGGCCG------UGa--CGau---UCGCGCUGUa -5'
33032 5' -57.3 NC_007497.1 + 8804 0.68 0.373798
Target:  5'- uGCGCCGGUAUcGCUcuAAGCaauguuGCGACGg -3'
miRNA:   3'- gCGUGGCCGUGaCGA--UUCG------CGCUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.