miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33035 5' -56.1 NC_007497.1 + 12787 0.69 0.400495
Target:  5'- uUCAgUGAGGGCGC-CUcaaGCCGGCGCg -3'
miRNA:   3'- uAGUaGUUUUCGCGcGAc--CGGCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 35777 0.69 0.409967
Target:  5'- gAUCAgCAAGgcGGUgGCGCUGuCCGGCGUa -3'
miRNA:   3'- -UAGUaGUUU--UCG-CGCGACcGGCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 16737 0.69 0.409967
Target:  5'- gGUCAcgCGAGcGGCGCGCUc-CCGGCGUa -3'
miRNA:   3'- -UAGUa-GUUU-UCGCGCGAccGGCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 16336 0.68 0.429322
Target:  5'- --uGUUGAacgGAGCGCGCcGGCCgucGGCGUa -3'
miRNA:   3'- uagUAGUU---UUCGCGCGaCCGG---CCGCG- -5'
33035 5' -56.1 NC_007497.1 + 16864 0.68 0.458316
Target:  5'- -gUAUCGAucGGCGCugaugcggGCUGcucguccGCCGGCGCg -3'
miRNA:   3'- uaGUAGUUu-UCGCG--------CGAC-------CGGCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 41483 0.68 0.459335
Target:  5'- uUC-UCGAAGGCGCuCgGuGCCGGCGg -3'
miRNA:   3'- uAGuAGUUUUCGCGcGaC-CGGCCGCg -5'
33035 5' -56.1 NC_007497.1 + 34072 0.68 0.459335
Target:  5'- -cCGaCAGGGGCGCGCgcacGCUGGCaGCg -3'
miRNA:   3'- uaGUaGUUUUCGCGCGac--CGGCCG-CG- -5'
33035 5' -56.1 NC_007497.1 + 33126 0.68 0.459335
Target:  5'- cGUCAgCGAGAggucGCGCgagaGCUGGCC-GCGCu -3'
miRNA:   3'- -UAGUaGUUUU----CGCG----CGACCGGcCGCG- -5'
33035 5' -56.1 NC_007497.1 + 16235 0.68 0.463421
Target:  5'- uUCGuUCGcgGGCGCccucacuuccacuacGCcgacGGCCGGCGCg -3'
miRNA:   3'- uAGU-AGUuuUCGCG---------------CGa---CCGGCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 32898 0.68 0.469585
Target:  5'- gAUCAgcggcUCAcguuGAGCGCGaUUGGCguguUGGCGCg -3'
miRNA:   3'- -UAGU-----AGUu---UUCGCGC-GACCG----GCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 2625 0.68 0.469585
Target:  5'- aAUCG-CAAGgauGCGcCGCggccGCCGGCGCg -3'
miRNA:   3'- -UAGUaGUUUu--CGC-GCGac--CGGCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 18493 0.67 0.479951
Target:  5'- -gCAUCuGAAGCGagagaaCUGGCCGGCcCg -3'
miRNA:   3'- uaGUAGuUUUCGCgc----GACCGGCCGcG- -5'
33035 5' -56.1 NC_007497.1 + 21509 0.67 0.501009
Target:  5'- ---uUCucGAGCGCGCcGugugaaugcuGCCGGCGCc -3'
miRNA:   3'- uaguAGuuUUCGCGCGaC----------CGGCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 23961 0.67 0.51169
Target:  5'- -aCA-CGAAGgacguGCGCGCcGGCCaGCGCu -3'
miRNA:   3'- uaGUaGUUUU-----CGCGCGaCCGGcCGCG- -5'
33035 5' -56.1 NC_007497.1 + 5627 0.67 0.522465
Target:  5'- -gCAUCAGAAG-GUagGCaaggGGCCGGCGa -3'
miRNA:   3'- uaGUAGUUUUCgCG--CGa---CCGGCCGCg -5'
33035 5' -56.1 NC_007497.1 + 43168 0.67 0.522465
Target:  5'- -cCGUCcgugcuGGAGCGcCGCaaagagauUGcGCCGGCGCu -3'
miRNA:   3'- uaGUAGu-----UUUCGC-GCG--------AC-CGGCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 29776 0.67 0.533325
Target:  5'- aGUCuUCGGgcgcGAGCGCGaaCUGGUcggucggaguCGGCGCg -3'
miRNA:   3'- -UAGuAGUU----UUCGCGC--GACCG----------GCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 9714 0.67 0.533325
Target:  5'- uUCAgcCAGccGaCGuCGC-GGCCGGCGCg -3'
miRNA:   3'- uAGUa-GUUuuC-GC-GCGaCCGGCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 30441 0.67 0.533325
Target:  5'- gGUCGgugCGAAGGUGUuuc-GCCGGCGCa -3'
miRNA:   3'- -UAGUa--GUUUUCGCGcgacCGGCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 14325 0.66 0.551966
Target:  5'- cAUCAUCAGuAAGCGUgauccagugcgucgGCUgucugaGGCCGGagaGCg -3'
miRNA:   3'- -UAGUAGUU-UUCGCG--------------CGA------CCGGCCg--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.