miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33035 5' -56.1 NC_007497.1 + 21471 0.66 0.57414
Target:  5'- cAUCGUCuGAAAGCagggcguccgugacGCGCUGGaUCuGCGCu -3'
miRNA:   3'- -UAGUAG-UUUUCG--------------CGCGACC-GGcCGCG- -5'
33035 5' -56.1 NC_007497.1 + 21509 0.67 0.501009
Target:  5'- ---uUCucGAGCGCGCcGugugaaugcuGCCGGCGCc -3'
miRNA:   3'- uaguAGuuUUCGCGCGaC----------CGGCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 23112 0.71 0.282591
Target:  5'- -gCGUCGuaGucGCGCucgcacuGCUGGCCGGCGa -3'
miRNA:   3'- uaGUAGU--UuuCGCG-------CGACCGGCCGCg -5'
33035 5' -56.1 NC_007497.1 + 23467 0.71 0.295979
Target:  5'- uGUCggCGAucucgcGCGCGCUGaucaggugcacgacGCCGGCGCc -3'
miRNA:   3'- -UAGuaGUUuu----CGCGCGAC--------------CGGCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 23875 0.84 0.039393
Target:  5'- cUCAUCc--GGCgugaaGCGCUGGCCGGCGCg -3'
miRNA:   3'- uAGUAGuuuUCG-----CGCGACCGGCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 23961 0.67 0.51169
Target:  5'- -aCA-CGAAGgacguGCGCGCcGGCCaGCGCu -3'
miRNA:   3'- uaGUaGUUUU-----CGCGCGaCCGGcCGCG- -5'
33035 5' -56.1 NC_007497.1 + 26475 0.7 0.364036
Target:  5'- -gCAUCGuuucCGCGCUgacGGCCGGCaGCg -3'
miRNA:   3'- uaGUAGUuuucGCGCGA---CCGGCCG-CG- -5'
33035 5' -56.1 NC_007497.1 + 26853 0.66 0.553069
Target:  5'- gAUCGaCGAcGGCGCGCagauucagcagcGGCCGGUGa -3'
miRNA:   3'- -UAGUaGUUuUCGCGCGa-----------CCGGCCGCg -5'
33035 5' -56.1 NC_007497.1 + 27243 0.72 0.268984
Target:  5'- -gCAUgGAcGGCGUGCUGGUCGGUccgggGCa -3'
miRNA:   3'- uaGUAgUUuUCGCGCGACCGGCCG-----CG- -5'
33035 5' -56.1 NC_007497.1 + 28132 0.71 0.305951
Target:  5'- -cCAUCGGAucgagcugccgAGUGCgaaauccgGCUGGCUGGUGCg -3'
miRNA:   3'- uaGUAGUUU-----------UCGCG--------CGACCGGCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 29776 0.67 0.533325
Target:  5'- aGUCuUCGGgcgcGAGCGCGaaCUGGUcggucggaguCGGCGCg -3'
miRNA:   3'- -UAGuAGUU----UUCGCGC--GACCG----------GCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 30441 0.67 0.533325
Target:  5'- gGUCGgugCGAAGGUGUuuc-GCCGGCGCa -3'
miRNA:   3'- -UAGUa--GUUUUCGCGcgacCGGCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 31328 0.69 0.381976
Target:  5'- --gGUCGGuGGGCGUguccuGCUGGgCGGCGCu -3'
miRNA:   3'- uagUAGUU-UUCGCG-----CGACCgGCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 32898 0.68 0.469585
Target:  5'- gAUCAgcggcUCAcguuGAGCGCGaUUGGCguguUGGCGCg -3'
miRNA:   3'- -UAGU-----AGUu---UUCGCGC-GACCG----GCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 33126 0.68 0.459335
Target:  5'- cGUCAgCGAGAggucGCGCgagaGCUGGCC-GCGCu -3'
miRNA:   3'- -UAGUaGUUUU----CGCG----CGACCGGcCGCG- -5'
33035 5' -56.1 NC_007497.1 + 33475 0.7 0.32994
Target:  5'- -cCAUCGGAcGCGgGC-GGgCGGCGCc -3'
miRNA:   3'- uaGUAGUUUuCGCgCGaCCgGCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 34072 0.68 0.459335
Target:  5'- -cCGaCAGGGGCGCGCgcacGCUGGCaGCg -3'
miRNA:   3'- uaGUaGUUUUCGCGCGac--CGGCCG-CG- -5'
33035 5' -56.1 NC_007497.1 + 34880 0.78 0.093131
Target:  5'- -gCGUCcGAGGCGuCGCUGGCguUGGCGCa -3'
miRNA:   3'- uaGUAGuUUUCGC-GCGACCG--GCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 35052 0.66 0.555277
Target:  5'- -aCA-CGGAuGCGaaGCUGGCCgaGGCGCg -3'
miRNA:   3'- uaGUaGUUUuCGCg-CGACCGG--CCGCG- -5'
33035 5' -56.1 NC_007497.1 + 35565 0.71 0.283322
Target:  5'- -cCGUCGAGAaccugaucGaCGCGCUGcggaauGCCGGCGCu -3'
miRNA:   3'- uaGUAGUUUU--------C-GCGCGAC------CGGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.