Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33035 | 5' | -56.1 | NC_007497.1 | + | 480 | 0.76 | 0.14713 |
Target: 5'- --gAUCGu-GGCGCGCUGGCaagagcagcagugCGGCGCg -3' miRNA: 3'- uagUAGUuuUCGCGCGACCG-------------GCCGCG- -5' |
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33035 | 5' | -56.1 | NC_007497.1 | + | 992 | 0.66 | 0.585306 |
Target: 5'- gAUCAUCGAAGGCgucuucggggugaaGCGCagccUGGCUGaCGUg -3' miRNA: 3'- -UAGUAGUUUUCG--------------CGCG----ACCGGCcGCG- -5' |
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33035 | 5' | -56.1 | NC_007497.1 | + | 2625 | 0.68 | 0.469585 |
Target: 5'- aAUCG-CAAGgauGCGcCGCggccGCCGGCGCg -3' miRNA: 3'- -UAGUaGUUUu--CGC-GCGac--CGGCCGCG- -5' |
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33035 | 5' | -56.1 | NC_007497.1 | + | 2910 | 0.66 | 0.566353 |
Target: 5'- uUCAacggCAGAAGCaugcacgcgGUGCUGGCgcaUGGUGCg -3' miRNA: 3'- uAGUa---GUUUUCG---------CGCGACCG---GCCGCG- -5' |
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33035 | 5' | -56.1 | NC_007497.1 | + | 3224 | 1.09 | 0.00055 |
Target: 5'- cAUCAUCAAAAGCGCGCUGGCCGGCGCc -3' miRNA: 3'- -UAGUAGUUUUCGCGCGACCGGCCGCG- -5' |
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33035 | 5' | -56.1 | NC_007497.1 | + | 3745 | 0.72 | 0.268984 |
Target: 5'- -cCAUCuGGAGGCGCggaaGCaGGCCGGCGa -3' miRNA: 3'- uaGUAG-UUUUCGCG----CGaCCGGCCGCg -5' |
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33035 | 5' | -56.1 | NC_007497.1 | + | 3812 | 0.66 | 0.588665 |
Target: 5'- cUCG-CAu--GCagGCGCUcggucgacugaaGGCCGGCGCg -3' miRNA: 3'- uAGUaGUuuuCG--CGCGA------------CCGGCCGCG- -5' |
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33035 | 5' | -56.1 | NC_007497.1 | + | 4985 | 0.78 | 0.095886 |
Target: 5'- gGUUcgCAcugaAAAGC-CGCUGGCCGGUGCg -3' miRNA: 3'- -UAGuaGU----UUUCGcGCGACCGGCCGCG- -5' |
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33035 | 5' | -56.1 | NC_007497.1 | + | 5102 | 0.7 | 0.355288 |
Target: 5'- aGUCGUCGGguAAGCGCGUU--CCGcGCGCa -3' miRNA: 3'- -UAGUAGUU--UUCGCGCGAccGGC-CGCG- -5' |
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33035 | 5' | -56.1 | NC_007497.1 | + | 5627 | 0.67 | 0.522465 |
Target: 5'- -gCAUCAGAAG-GUagGCaaggGGCCGGCGa -3' miRNA: 3'- uaGUAGUUUUCgCG--CGa---CCGGCCGCg -5' |
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33035 | 5' | -56.1 | NC_007497.1 | + | 9714 | 0.67 | 0.533325 |
Target: 5'- uUCAgcCAGccGaCGuCGC-GGCCGGCGCg -3' miRNA: 3'- uAGUa-GUUuuC-GC-GCGaCCGGCCGCG- -5' |
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33035 | 5' | -56.1 | NC_007497.1 | + | 12787 | 0.69 | 0.400495 |
Target: 5'- uUCAgUGAGGGCGC-CUcaaGCCGGCGCg -3' miRNA: 3'- uAGUaGUUUUCGCGcGAc--CGGCCGCG- -5' |
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33035 | 5' | -56.1 | NC_007497.1 | + | 14325 | 0.66 | 0.551966 |
Target: 5'- cAUCAUCAGuAAGCGUgauccagugcgucgGCUgucugaGGCCGGagaGCg -3' miRNA: 3'- -UAGUAGUU-UUCGCG--------------CGA------CCGGCCg--CG- -5' |
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33035 | 5' | -56.1 | NC_007497.1 | + | 15323 | 0.66 | 0.577485 |
Target: 5'- ---------cGCgGCGCUcGGCCGGCGUc -3' miRNA: 3'- uaguaguuuuCG-CGCGA-CCGGCCGCG- -5' |
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33035 | 5' | -56.1 | NC_007497.1 | + | 16235 | 0.68 | 0.463421 |
Target: 5'- uUCGuUCGcgGGCGCccucacuuccacuacGCcgacGGCCGGCGCg -3' miRNA: 3'- uAGU-AGUuuUCGCG---------------CGa---CCGGCCGCG- -5' |
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33035 | 5' | -56.1 | NC_007497.1 | + | 16336 | 0.68 | 0.429322 |
Target: 5'- --uGUUGAacgGAGCGCGCcGGCCgucGGCGUa -3' miRNA: 3'- uagUAGUU---UUCGCGCGaCCGG---CCGCG- -5' |
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33035 | 5' | -56.1 | NC_007497.1 | + | 16737 | 0.69 | 0.409967 |
Target: 5'- gGUCAcgCGAGcGGCGCGCUc-CCGGCGUa -3' miRNA: 3'- -UAGUa-GUUU-UCGCGCGAccGGCCGCG- -5' |
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33035 | 5' | -56.1 | NC_007497.1 | + | 16864 | 0.68 | 0.458316 |
Target: 5'- -gUAUCGAucGGCGCugaugcggGCUGcucguccGCCGGCGCg -3' miRNA: 3'- uaGUAGUUu-UCGCG--------CGAC-------CGGCCGCG- -5' |
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33035 | 5' | -56.1 | NC_007497.1 | + | 17633 | 0.66 | 0.555277 |
Target: 5'- -cCGUCAccucGGCGCGCggcuccGGCUGGCcCg -3' miRNA: 3'- uaGUAGUuu--UCGCGCGa-----CCGGCCGcG- -5' |
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33035 | 5' | -56.1 | NC_007497.1 | + | 18493 | 0.67 | 0.479951 |
Target: 5'- -gCAUCuGAAGCGagagaaCUGGCCGGCcCg -3' miRNA: 3'- uaGUAGuUUUCGCgc----GACCGGCCGcG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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