miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33035 5' -56.1 NC_007497.1 + 23875 0.84 0.039393
Target:  5'- cUCAUCc--GGCgugaaGCGCUGGCCGGCGCg -3'
miRNA:   3'- uAGUAGuuuUCG-----CGCGACCGGCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 29776 0.67 0.533325
Target:  5'- aGUCuUCGGgcgcGAGCGCGaaCUGGUcggucggaguCGGCGCg -3'
miRNA:   3'- -UAGuAGUU----UUCGCGC--GACCG----------GCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 18493 0.67 0.479951
Target:  5'- -gCAUCuGAAGCGagagaaCUGGCCGGCcCg -3'
miRNA:   3'- uaGUAGuUUUCGCgc----GACCGGCCGcG- -5'
33035 5' -56.1 NC_007497.1 + 16235 0.68 0.463421
Target:  5'- uUCGuUCGcgGGCGCccucacuuccacuacGCcgacGGCCGGCGCg -3'
miRNA:   3'- uAGU-AGUuuUCGCG---------------CGa---CCGGCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 12787 0.69 0.400495
Target:  5'- uUCAgUGAGGGCGC-CUcaaGCCGGCGCg -3'
miRNA:   3'- uAGUaGUUUUCGCGcGAc--CGGCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 26475 0.7 0.364036
Target:  5'- -gCAUCGuuucCGCGCUgacGGCCGGCaGCg -3'
miRNA:   3'- uaGUAGUuuucGCGCGA---CCGGCCG-CG- -5'
33035 5' -56.1 NC_007497.1 + 5102 0.7 0.355288
Target:  5'- aGUCGUCGGguAAGCGCGUU--CCGcGCGCa -3'
miRNA:   3'- -UAGUAGUU--UUCGCGCGAccGGC-CGCG- -5'
33035 5' -56.1 NC_007497.1 + 23467 0.71 0.295979
Target:  5'- uGUCggCGAucucgcGCGCGCUGaucaggugcacgacGCCGGCGCc -3'
miRNA:   3'- -UAGuaGUUuu----CGCGCGAC--------------CGGCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 23112 0.71 0.282591
Target:  5'- -gCGUCGuaGucGCGCucgcacuGCUGGCCGGCGa -3'
miRNA:   3'- uaGUAGU--UuuCGCG-------CGACCGGCCGCg -5'
33035 5' -56.1 NC_007497.1 + 35565 0.71 0.283322
Target:  5'- -cCGUCGAGAaccugaucGaCGCGCUGcggaauGCCGGCGCu -3'
miRNA:   3'- uaGUAGUUUU--------C-GCGCGAC------CGGCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 43691 0.72 0.276079
Target:  5'- gGUCAUCAuccugacaacgcAAAGCGacgagcCGCcGGCCGGUGUg -3'
miRNA:   3'- -UAGUAGU------------UUUCGC------GCGaCCGGCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 3745 0.72 0.268984
Target:  5'- -cCAUCuGGAGGCGCggaaGCaGGCCGGCGa -3'
miRNA:   3'- uaGUAG-UUUUCGCG----CGaCCGGCCGCg -5'
33035 5' -56.1 NC_007497.1 + 41534 0.72 0.268984
Target:  5'- uUCAaCGAGGGCGCGCUGuuGCgCGGCa- -3'
miRNA:   3'- uAGUaGUUUUCGCGCGAC--CG-GCCGcg -5'
33035 5' -56.1 NC_007497.1 + 27243 0.72 0.268984
Target:  5'- -gCAUgGAcGGCGUGCUGGUCGGUccgggGCa -3'
miRNA:   3'- uaGUAgUUuUCGCGCGACCGGCCG-----CG- -5'
33035 5' -56.1 NC_007497.1 + 35634 0.73 0.235705
Target:  5'- -aCG-CGAucGCGCGCggcaugGGCCGGgGCa -3'
miRNA:   3'- uaGUaGUUuuCGCGCGa-----CCGGCCgCG- -5'
33035 5' -56.1 NC_007497.1 + 480 0.76 0.14713
Target:  5'- --gAUCGu-GGCGCGCUGGCaagagcagcagugCGGCGCg -3'
miRNA:   3'- uagUAGUuuUCGCGCGACCG-------------GCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 43044 0.77 0.116425
Target:  5'- -gCAUCG--AGCGCGCUgggcuucuauacaaGGCCGGCGUc -3'
miRNA:   3'- uaGUAGUuuUCGCGCGA--------------CCGGCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 4985 0.78 0.095886
Target:  5'- gGUUcgCAcugaAAAGC-CGCUGGCCGGUGCg -3'
miRNA:   3'- -UAGuaGU----UUUCGcGCGACCGGCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 34880 0.78 0.093131
Target:  5'- -gCGUCcGAGGCGuCGCUGGCguUGGCGCa -3'
miRNA:   3'- uaGUAGuUUUCGC-GCGACCG--GCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 3812 0.66 0.588665
Target:  5'- cUCG-CAu--GCagGCGCUcggucgacugaaGGCCGGCGCg -3'
miRNA:   3'- uAGUaGUuuuCG--CGCGA------------CCGGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.