miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33035 5' -56.1 NC_007497.1 + 33475 0.7 0.32994
Target:  5'- -cCAUCGGAcGCGgGC-GGgCGGCGCc -3'
miRNA:   3'- uaGUAGUUUuCGCgCGaCCgGCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 43044 0.77 0.116425
Target:  5'- -gCAUCG--AGCGCGCUgggcuucuauacaaGGCCGGCGUc -3'
miRNA:   3'- uaGUAGUuuUCGCGCGA--------------CCGGCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 480 0.76 0.14713
Target:  5'- --gAUCGu-GGCGCGCUGGCaagagcagcagugCGGCGCg -3'
miRNA:   3'- uagUAGUuuUCGCGCGACCG-------------GCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 35634 0.73 0.235705
Target:  5'- -aCG-CGAucGCGCGCggcaugGGCCGGgGCa -3'
miRNA:   3'- uaGUaGUUuuCGCGCGa-----CCGGCCgCG- -5'
33035 5' -56.1 NC_007497.1 + 27243 0.72 0.268984
Target:  5'- -gCAUgGAcGGCGUGCUGGUCGGUccgggGCa -3'
miRNA:   3'- uaGUAgUUuUCGCGCGACCGGCCG-----CG- -5'
33035 5' -56.1 NC_007497.1 + 41534 0.72 0.268984
Target:  5'- uUCAaCGAGGGCGCGCUGuuGCgCGGCa- -3'
miRNA:   3'- uAGUaGUUUUCGCGCGAC--CG-GCCGcg -5'
33035 5' -56.1 NC_007497.1 + 3745 0.72 0.268984
Target:  5'- -cCAUCuGGAGGCGCggaaGCaGGCCGGCGa -3'
miRNA:   3'- uaGUAG-UUUUCGCG----CGaCCGGCCGCg -5'
33035 5' -56.1 NC_007497.1 + 43691 0.72 0.276079
Target:  5'- gGUCAUCAuccugacaacgcAAAGCGacgagcCGCcGGCCGGUGUg -3'
miRNA:   3'- -UAGUAGU------------UUUCGC------GCGaCCGGCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 35565 0.71 0.283322
Target:  5'- -cCGUCGAGAaccugaucGaCGCGCUGcggaauGCCGGCGCu -3'
miRNA:   3'- uaGUAGUUUU--------C-GCGCGAC------CGGCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 4985 0.78 0.095886
Target:  5'- gGUUcgCAcugaAAAGC-CGCUGGCCGGUGCg -3'
miRNA:   3'- -UAGuaGU----UUUCGcGCGACCGGCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 34880 0.78 0.093131
Target:  5'- -gCGUCcGAGGCGuCGCUGGCguUGGCGCa -3'
miRNA:   3'- uaGUAGuUUUCGC-GCGACCG--GCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 3224 1.09 0.00055
Target:  5'- cAUCAUCAAAAGCGCGCUGGCCGGCGCc -3'
miRNA:   3'- -UAGUAGUUUUCGCGCGACCGGCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 38242 0.7 0.338239
Target:  5'- --aGUCGAcuaaggcgcucAGGCGCGCcacggucGCCGGCGCg -3'
miRNA:   3'- uagUAGUU-----------UUCGCGCGac-----CGGCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 16864 0.68 0.458316
Target:  5'- -gUAUCGAucGGCGCugaugcggGCUGcucguccGCCGGCGCg -3'
miRNA:   3'- uaGUAGUUu-UCGCG--------CGAC-------CGGCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 31328 0.69 0.381976
Target:  5'- --gGUCGGuGGGCGUguccuGCUGGgCGGCGCu -3'
miRNA:   3'- uagUAGUU-UUCGCG-----CGACCgGCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 16336 0.68 0.429322
Target:  5'- --uGUUGAacgGAGCGCGCcGGCCgucGGCGUa -3'
miRNA:   3'- uagUAGUU---UUCGCGCGaCCGG---CCGCG- -5'
33035 5' -56.1 NC_007497.1 + 41483 0.68 0.459335
Target:  5'- uUC-UCGAAGGCGCuCgGuGCCGGCGg -3'
miRNA:   3'- uAGuAGUUUUCGCGcGaC-CGGCCGCg -5'
33035 5' -56.1 NC_007497.1 + 3812 0.66 0.588665
Target:  5'- cUCG-CAu--GCagGCGCUcggucgacugaaGGCCGGCGCg -3'
miRNA:   3'- uAGUaGUuuuCG--CGCGA------------CCGGCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 35777 0.69 0.409967
Target:  5'- gAUCAgCAAGgcGGUgGCGCUGuCCGGCGUa -3'
miRNA:   3'- -UAGUaGUUU--UCG-CGCGACcGGCCGCG- -5'
33035 5' -56.1 NC_007497.1 + 16737 0.69 0.409967
Target:  5'- gGUCAcgCGAGcGGCGCGCUc-CCGGCGUa -3'
miRNA:   3'- -UAGUa-GUUU-UCGCGCGAccGGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.