Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33035 | 5' | -56.1 | NC_007497.1 | + | 3224 | 1.09 | 0.00055 |
Target: 5'- cAUCAUCAAAAGCGCGCUGGCCGGCGCc -3' miRNA: 3'- -UAGUAGUUUUCGCGCGACCGGCCGCG- -5' |
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33035 | 5' | -56.1 | NC_007497.1 | + | 23875 | 0.84 | 0.039393 |
Target: 5'- cUCAUCc--GGCgugaaGCGCUGGCCGGCGCg -3' miRNA: 3'- uAGUAGuuuUCG-----CGCGACCGGCCGCG- -5' |
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33035 | 5' | -56.1 | NC_007497.1 | + | 34880 | 0.78 | 0.093131 |
Target: 5'- -gCGUCcGAGGCGuCGCUGGCguUGGCGCa -3' miRNA: 3'- uaGUAGuUUUCGC-GCGACCG--GCCGCG- -5' |
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33035 | 5' | -56.1 | NC_007497.1 | + | 4985 | 0.78 | 0.095886 |
Target: 5'- gGUUcgCAcugaAAAGC-CGCUGGCCGGUGCg -3' miRNA: 3'- -UAGuaGU----UUUCGcGCGACCGGCCGCG- -5' |
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33035 | 5' | -56.1 | NC_007497.1 | + | 43044 | 0.77 | 0.116425 |
Target: 5'- -gCAUCG--AGCGCGCUgggcuucuauacaaGGCCGGCGUc -3' miRNA: 3'- uaGUAGUuuUCGCGCGA--------------CCGGCCGCG- -5' |
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33035 | 5' | -56.1 | NC_007497.1 | + | 480 | 0.76 | 0.14713 |
Target: 5'- --gAUCGu-GGCGCGCUGGCaagagcagcagugCGGCGCg -3' miRNA: 3'- uagUAGUuuUCGCGCGACCG-------------GCCGCG- -5' |
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33035 | 5' | -56.1 | NC_007497.1 | + | 35634 | 0.73 | 0.235705 |
Target: 5'- -aCG-CGAucGCGCGCggcaugGGCCGGgGCa -3' miRNA: 3'- uaGUaGUUuuCGCGCGa-----CCGGCCgCG- -5' |
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33035 | 5' | -56.1 | NC_007497.1 | + | 3745 | 0.72 | 0.268984 |
Target: 5'- -cCAUCuGGAGGCGCggaaGCaGGCCGGCGa -3' miRNA: 3'- uaGUAG-UUUUCGCG----CGaCCGGCCGCg -5' |
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33035 | 5' | -56.1 | NC_007497.1 | + | 41534 | 0.72 | 0.268984 |
Target: 5'- uUCAaCGAGGGCGCGCUGuuGCgCGGCa- -3' miRNA: 3'- uAGUaGUUUUCGCGCGAC--CG-GCCGcg -5' |
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33035 | 5' | -56.1 | NC_007497.1 | + | 27243 | 0.72 | 0.268984 |
Target: 5'- -gCAUgGAcGGCGUGCUGGUCGGUccgggGCa -3' miRNA: 3'- uaGUAgUUuUCGCGCGACCGGCCG-----CG- -5' |
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33035 | 5' | -56.1 | NC_007497.1 | + | 43691 | 0.72 | 0.276079 |
Target: 5'- gGUCAUCAuccugacaacgcAAAGCGacgagcCGCcGGCCGGUGUg -3' miRNA: 3'- -UAGUAGU------------UUUCGC------GCGaCCGGCCGCG- -5' |
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33035 | 5' | -56.1 | NC_007497.1 | + | 23112 | 0.71 | 0.282591 |
Target: 5'- -gCGUCGuaGucGCGCucgcacuGCUGGCCGGCGa -3' miRNA: 3'- uaGUAGU--UuuCGCG-------CGACCGGCCGCg -5' |
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33035 | 5' | -56.1 | NC_007497.1 | + | 35565 | 0.71 | 0.283322 |
Target: 5'- -cCGUCGAGAaccugaucGaCGCGCUGcggaauGCCGGCGCu -3' miRNA: 3'- uaGUAGUUUU--------C-GCGCGAC------CGGCCGCG- -5' |
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33035 | 5' | -56.1 | NC_007497.1 | + | 23467 | 0.71 | 0.295979 |
Target: 5'- uGUCggCGAucucgcGCGCGCUGaucaggugcacgacGCCGGCGCc -3' miRNA: 3'- -UAGuaGUUuu----CGCGCGAC--------------CGGCCGCG- -5' |
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33035 | 5' | -56.1 | NC_007497.1 | + | 28132 | 0.71 | 0.305951 |
Target: 5'- -cCAUCGGAucgagcugccgAGUGCgaaauccgGCUGGCUGGUGCg -3' miRNA: 3'- uaGUAGUUU-----------UCGCG--------CGACCGGCCGCG- -5' |
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33035 | 5' | -56.1 | NC_007497.1 | + | 33475 | 0.7 | 0.32994 |
Target: 5'- -cCAUCGGAcGCGgGC-GGgCGGCGCc -3' miRNA: 3'- uaGUAGUUUuCGCgCGaCCgGCCGCG- -5' |
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33035 | 5' | -56.1 | NC_007497.1 | + | 38242 | 0.7 | 0.338239 |
Target: 5'- --aGUCGAcuaaggcgcucAGGCGCGCcacggucGCCGGCGCg -3' miRNA: 3'- uagUAGUU-----------UUCGCGCGac-----CGGCCGCG- -5' |
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33035 | 5' | -56.1 | NC_007497.1 | + | 5102 | 0.7 | 0.355288 |
Target: 5'- aGUCGUCGGguAAGCGCGUU--CCGcGCGCa -3' miRNA: 3'- -UAGUAGUU--UUCGCGCGAccGGC-CGCG- -5' |
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33035 | 5' | -56.1 | NC_007497.1 | + | 26475 | 0.7 | 0.364036 |
Target: 5'- -gCAUCGuuucCGCGCUgacGGCCGGCaGCg -3' miRNA: 3'- uaGUAGUuuucGCGCGA---CCGGCCG-CG- -5' |
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33035 | 5' | -56.1 | NC_007497.1 | + | 31328 | 0.69 | 0.381976 |
Target: 5'- --gGUCGGuGGGCGUguccuGCUGGgCGGCGCu -3' miRNA: 3'- uagUAGUU-UUCGCG-----CGACCgGCCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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