miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33036 5' -51.5 NC_007497.1 + 1160 0.66 0.883909
Target:  5'- uGCAGUGAucaucGCGCGcgCUGccccucgugaccuGCCGUGCu -3'
miRNA:   3'- cCGUUACU-----UGCGUuaGGC-------------CGGCAUGc -5'
33036 5' -51.5 NC_007497.1 + 23569 0.66 0.876836
Target:  5'- gGGCGcgGcGGCGgGcgCCGGCguCGUGCa -3'
miRNA:   3'- -CCGUuaC-UUGCgUuaGGCCG--GCAUGc -5'
33036 5' -51.5 NC_007497.1 + 38208 0.66 0.876836
Target:  5'- cGGCGc-GAACGUGAUCCGGgaCGagGCGc -3'
miRNA:   3'- -CCGUuaCUUGCGUUAGGCCg-GCa-UGC- -5'
33036 5' -51.5 NC_007497.1 + 7959 0.66 0.87443
Target:  5'- uGGCGGUGAGUGCAgcagaccucgccgaGUgCCGGCUGagaaGCGg -3'
miRNA:   3'- -CCGUUACUUGCGU--------------UA-GGCCGGCa---UGC- -5'
33036 5' -51.5 NC_007497.1 + 29369 0.66 0.868722
Target:  5'- cGGUuc-GAGCGCcacGUCgCGGCCG-ACGu -3'
miRNA:   3'- -CCGuuaCUUGCGu--UAG-GCCGGCaUGC- -5'
33036 5' -51.5 NC_007497.1 + 37895 0.66 0.860345
Target:  5'- gGGCuuUGAGCGCAuugaccAUCCGGaCGcaauCGg -3'
miRNA:   3'- -CCGuuACUUGCGU------UAGGCCgGCau--GC- -5'
33036 5' -51.5 NC_007497.1 + 28388 0.66 0.860345
Target:  5'- cGGCGGUcGAGCGCGAaaCuGCgGUugGg -3'
miRNA:   3'- -CCGUUA-CUUGCGUUagGcCGgCAugC- -5'
33036 5' -51.5 NC_007497.1 + 33059 0.66 0.849957
Target:  5'- aGGCAAUGAGcCGCGugagcgaugaguUCCGucGCCG-ACGu -3'
miRNA:   3'- -CCGUUACUU-GCGUu-----------AGGC--CGGCaUGC- -5'
33036 5' -51.5 NC_007497.1 + 10799 0.66 0.842834
Target:  5'- aGGCAGcGGugGCGAaucUCgGGCCGa--- -3'
miRNA:   3'- -CCGUUaCUugCGUU---AGgCCGGCaugc -5'
33036 5' -51.5 NC_007497.1 + 1440 0.66 0.842834
Target:  5'- cGGcCAcgGAAagGCGAUCUGcacGCCGUGCu -3'
miRNA:   3'- -CC-GUuaCUUg-CGUUAGGC---CGGCAUGc -5'
33036 5' -51.5 NC_007497.1 + 30468 0.67 0.824378
Target:  5'- cGCAAUGugugucGCGCuggagGAUCUGGUCgGUGCGa -3'
miRNA:   3'- cCGUUACu-----UGCG-----UUAGGCCGG-CAUGC- -5'
33036 5' -51.5 NC_007497.1 + 10948 0.67 0.824378
Target:  5'- gGGCGGU-AGCGCAgcGUUCGGUgcgCGUugGg -3'
miRNA:   3'- -CCGUUAcUUGCGU--UAGGCCG---GCAugC- -5'
33036 5' -51.5 NC_007497.1 + 8898 0.67 0.821533
Target:  5'- cGGCAcuaGAGC-CGAUCCGuGCCGUugaggccgggaccgGCGa -3'
miRNA:   3'- -CCGUua-CUUGcGUUAGGC-CGGCA--------------UGC- -5'
33036 5' -51.5 NC_007497.1 + 37913 0.67 0.81482
Target:  5'- aGCGAUcGACGCucgaacgCCGGCCGcAUGa -3'
miRNA:   3'- cCGUUAcUUGCGuua----GGCCGGCaUGC- -5'
33036 5' -51.5 NC_007497.1 + 38832 0.67 0.805057
Target:  5'- uGCGAUGAccacCGCGAUCgaGGCCG-GCa -3'
miRNA:   3'- cCGUUACUu---GCGUUAGg-CCGGCaUGc -5'
33036 5' -51.5 NC_007497.1 + 41209 0.67 0.805057
Target:  5'- cGCucc-AACGC-AUCCGGCCGcACGu -3'
miRNA:   3'- cCGuuacUUGCGuUAGGCCGGCaUGC- -5'
33036 5' -51.5 NC_007497.1 + 34926 0.67 0.7951
Target:  5'- cGGCcGUGAucgcGCGCGAgacCgCGGCCGcGCa -3'
miRNA:   3'- -CCGuUACU----UGCGUUa--G-GCCGGCaUGc -5'
33036 5' -51.5 NC_007497.1 + 27186 0.67 0.7951
Target:  5'- aGGCGggGcGGCGCAucggCGGCCGUAUc -3'
miRNA:   3'- -CCGUuaC-UUGCGUuag-GCCGGCAUGc -5'
33036 5' -51.5 NC_007497.1 + 42799 0.68 0.784962
Target:  5'- gGGCAGUugGAaauGCGCGAgucguUCCGGUCGggaACGc -3'
miRNA:   3'- -CCGUUA--CU---UGCGUU-----AGGCCGGCa--UGC- -5'
33036 5' -51.5 NC_007497.1 + 467 0.68 0.774653
Target:  5'- uGGCAA-GAGCaGCAGUgCGGCgCGcgguUACGg -3'
miRNA:   3'- -CCGUUaCUUG-CGUUAgGCCG-GC----AUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.