miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33047 3' -53.9 NC_007497.1 + 13670 0.66 0.72358
Target:  5'- cCGCAGGGGAcgccgcaggggccgcACgGGACGCcGCaugGGUCg -3'
miRNA:   3'- -GCGUCUCUU---------------UGgUCUGCGuCGg--CUAG- -5'
33047 3' -53.9 NC_007497.1 + 13736 0.66 0.72358
Target:  5'- cCGCAGGGGAcgccgcaggggccgcACgGGACGCcGCaugGGUCg -3'
miRNA:   3'- -GCGUCUCUU---------------UGgUCUGCGuCGg--CUAG- -5'
33047 3' -53.9 NC_007497.1 + 22810 0.66 0.697033
Target:  5'- aGCuG-GAAcACCGGGCGCAgacGCCGAacUCg -3'
miRNA:   3'- gCGuCuCUU-UGGUCUGCGU---CGGCU--AG- -5'
33047 3' -53.9 NC_007497.1 + 35150 0.67 0.663328
Target:  5'- gGCGGcGGAggUCGcGGCGCAGgCCGAg- -3'
miRNA:   3'- gCGUC-UCUuuGGU-CUGCGUC-GGCUag -5'
33047 3' -53.9 NC_007497.1 + 34944 0.67 0.652016
Target:  5'- uCGCcGGGAcGCCGuAUGCGGCCguGAUCg -3'
miRNA:   3'- -GCGuCUCUuUGGUcUGCGUCGG--CUAG- -5'
33047 3' -53.9 NC_007497.1 + 35664 0.67 0.652016
Target:  5'- gCGUucuGGAGGAauuGCCcGGCGUGGCCGAc- -3'
miRNA:   3'- -GCG---UCUCUU---UGGuCUGCGUCGGCUag -5'
33047 3' -53.9 NC_007497.1 + 8243 0.67 0.652015
Target:  5'- uCGCuGAGAAGCgCGGugGCAGUa-GUUg -3'
miRNA:   3'- -GCGuCUCUUUG-GUCugCGUCGgcUAG- -5'
33047 3' -53.9 NC_007497.1 + 41972 0.67 0.640684
Target:  5'- aGCGGAGcAAGCCGaGCGC-GCCGcuUCa -3'
miRNA:   3'- gCGUCUC-UUUGGUcUGCGuCGGCu-AG- -5'
33047 3' -53.9 NC_007497.1 + 35197 0.67 0.640684
Target:  5'- gCGCGGAGcGAUCGcGAUGCGGCUGcggCg -3'
miRNA:   3'- -GCGUCUCuUUGGU-CUGCGUCGGCua-G- -5'
33047 3' -53.9 NC_007497.1 + 10804 0.67 0.640684
Target:  5'- gGCAGAGgcAgCGGugGCgaaucucgGGCCGAa- -3'
miRNA:   3'- gCGUCUCuuUgGUCugCG--------UCGGCUag -5'
33047 3' -53.9 NC_007497.1 + 8433 0.67 0.628209
Target:  5'- gGCAGAGcAAGCUuucacgcgacacuGGAguucCGCAGCCGAcgaUCa -3'
miRNA:   3'- gCGUCUC-UUUGG-------------UCU----GCGUCGGCU---AG- -5'
33047 3' -53.9 NC_007497.1 + 2408 0.68 0.618005
Target:  5'- gCGCA-AGAAACCGauGGCGC-GCgGAUCg -3'
miRNA:   3'- -GCGUcUCUUUGGU--CUGCGuCGgCUAG- -5'
33047 3' -53.9 NC_007497.1 + 26403 0.68 0.618005
Target:  5'- gCGCAccGAGAucugguacAGCCGGACGCcgAGCCGc-- -3'
miRNA:   3'- -GCGU--CUCU--------UUGGUCUGCG--UCGGCuag -5'
33047 3' -53.9 NC_007497.1 + 15286 0.68 0.616872
Target:  5'- gCGCGGGGGcuucacgAGCUcGugGCGGgCGAUCc -3'
miRNA:   3'- -GCGUCUCU-------UUGGuCugCGUCgGCUAG- -5'
33047 3' -53.9 NC_007497.1 + 959 0.68 0.595379
Target:  5'- aCGCGGuaauggcuGAAGCCcgagcAGuACGCGGCCGAc- -3'
miRNA:   3'- -GCGUCu-------CUUUGG-----UC-UGCGUCGGCUag -5'
33047 3' -53.9 NC_007497.1 + 44608 0.68 0.594251
Target:  5'- aGCAGccggcgccagcccAGAAGCCGGACGgGuUCGAUCu -3'
miRNA:   3'- gCGUC-------------UCUUUGGUCUGCgUcGGCUAG- -5'
33047 3' -53.9 NC_007497.1 + 32829 0.69 0.561712
Target:  5'- cCGCcGAGAAcgccGCUGGGCGC-GCCGAg- -3'
miRNA:   3'- -GCGuCUCUU----UGGUCUGCGuCGGCUag -5'
33047 3' -53.9 NC_007497.1 + 3516 0.69 0.539552
Target:  5'- gCGguGAGGGA-CGGugGCGGCUGGc- -3'
miRNA:   3'- -GCguCUCUUUgGUCugCGUCGGCUag -5'
33047 3' -53.9 NC_007497.1 + 16148 0.7 0.475121
Target:  5'- gGCGGAuuGAGCCAGACGCGcCCGcgCc -3'
miRNA:   3'- gCGUCUc-UUUGGUCUGCGUcGGCuaG- -5'
33047 3' -53.9 NC_007497.1 + 10545 0.71 0.414761
Target:  5'- uGUcGAGcAGCCAGACgGCAGCgUGAUCg -3'
miRNA:   3'- gCGuCUCuUUGGUCUG-CGUCG-GCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.