miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33051 3' -52.1 NC_007497.1 + 17060 1.14 0.000861
Target:  5'- aCACAUCGAACGGCGGCAUCGAUUGCCa -3'
miRNA:   3'- -GUGUAGCUUGCCGCCGUAGCUAACGG- -5'
33051 3' -52.1 NC_007497.1 + 40806 0.81 0.151123
Target:  5'- cCGCAUCGAACGGCGcgaGCGUCGcugcagcgGCCg -3'
miRNA:   3'- -GUGUAGCUUGCCGC---CGUAGCuaa-----CGG- -5'
33051 3' -52.1 NC_007497.1 + 39622 0.79 0.210677
Target:  5'- uCACGUCGGACGGCauCAUCGAUcuggucuacgaccUGCCg -3'
miRNA:   3'- -GUGUAGCUUGCCGccGUAGCUA-------------ACGG- -5'
33051 3' -52.1 NC_007497.1 + 35816 0.77 0.255141
Target:  5'- uCGCGUCGAGCGGCuGCcgCG-UUGCUu -3'
miRNA:   3'- -GUGUAGCUUGCCGcCGuaGCuAACGG- -5'
33051 3' -52.1 NC_007497.1 + 3845 0.76 0.290878
Target:  5'- gGCGUCG-ACGuGCGGC--CGAUUGCCc -3'
miRNA:   3'- gUGUAGCuUGC-CGCCGuaGCUAACGG- -5'
33051 3' -52.1 NC_007497.1 + 42887 0.76 0.314141
Target:  5'- cCGCAUC--GCGGCGGCGUCGGggcaGCg -3'
miRNA:   3'- -GUGUAGcuUGCCGCCGUAGCUaa--CGg -5'
33051 3' -52.1 NC_007497.1 + 27696 0.75 0.364804
Target:  5'- --uGUCGGACggaaaaGGCGGCGUCGA--GCCg -3'
miRNA:   3'- gugUAGCUUG------CCGCCGUAGCUaaCGG- -5'
33051 3' -52.1 NC_007497.1 + 32483 0.74 0.401585
Target:  5'- aCGCGUUGccgccGGCGGCGGCcgCGAc-GCCa -3'
miRNA:   3'- -GUGUAGC-----UUGCCGCCGuaGCUaaCGG- -5'
33051 3' -52.1 NC_007497.1 + 25666 0.73 0.42084
Target:  5'- --gGUCGAcccgaacaACGGCGGC-UCGAUgaucgUGCCa -3'
miRNA:   3'- gugUAGCU--------UGCCGCCGuAGCUA-----ACGG- -5'
33051 3' -52.1 NC_007497.1 + 31495 0.73 0.46096
Target:  5'- aACGUUGGAaGcGCGGUAaCGGUUGCCa -3'
miRNA:   3'- gUGUAGCUUgC-CGCCGUaGCUAACGG- -5'
33051 3' -52.1 NC_007497.1 + 34023 0.72 0.513789
Target:  5'- --uGUCGGccGCGGCcccugccGUAUCGAUUGCCg -3'
miRNA:   3'- gugUAGCU--UGCCGc------CGUAGCUAACGG- -5'
33051 3' -52.1 NC_007497.1 + 36841 0.72 0.513789
Target:  5'- uGCG-CGAgGCGGCgGGCGUCGA--GCCg -3'
miRNA:   3'- gUGUaGCU-UGCCG-CCGUAGCUaaCGG- -5'
33051 3' -52.1 NC_007497.1 + 43046 0.71 0.53232
Target:  5'- uCGCAUCGAGCgcgcugGGCuucuauacaaggccGGCGUCGAcccgGCCg -3'
miRNA:   3'- -GUGUAGCUUG------CCG--------------CCGUAGCUaa--CGG- -5'
33051 3' -52.1 NC_007497.1 + 7695 0.71 0.568927
Target:  5'- aCGCAUCGGGCGG-GuCAUCGAggggGCUg -3'
miRNA:   3'- -GUGUAGCUUGCCgCcGUAGCUaa--CGG- -5'
33051 3' -52.1 NC_007497.1 + 40238 0.7 0.610661
Target:  5'- aCGCGUCGGAcguCGGCagacccgccuucacGGCGUCGAgcUGCUu -3'
miRNA:   3'- -GUGUAGCUU---GCCG--------------CCGUAGCUa-ACGG- -5'
33051 3' -52.1 NC_007497.1 + 11774 0.7 0.614063
Target:  5'- aCGCcuUCGGGCgcacuGGCGGUAUCGGUUcCCg -3'
miRNA:   3'- -GUGu-AGCUUG-----CCGCCGUAGCUAAcGG- -5'
33051 3' -52.1 NC_007497.1 + 4258 0.7 0.636771
Target:  5'- gGCGcCGGAauUGGCGGCGaaUCGuccGUUGCCg -3'
miRNA:   3'- gUGUaGCUU--GCCGCCGU--AGC---UAACGG- -5'
33051 3' -52.1 NC_007497.1 + 33391 0.69 0.648124
Target:  5'- gCGCGUCGAgGCGGUGGCGacCGAcaaGCUg -3'
miRNA:   3'- -GUGUAGCU-UGCCGCCGUa-GCUaa-CGG- -5'
33051 3' -52.1 NC_007497.1 + 8699 0.69 0.65946
Target:  5'- aGCGgaagCGGGCGGgGcGCGUCGGccGCCc -3'
miRNA:   3'- gUGUa---GCUUGCCgC-CGUAGCUaaCGG- -5'
33051 3' -52.1 NC_007497.1 + 29775 0.69 0.65946
Target:  5'- uCGCAUcCGAACGGCacGGCGcagcCGAgcaugGCCg -3'
miRNA:   3'- -GUGUA-GCUUGCCG--CCGUa---GCUaa---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.