miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33051 3' -52.1 NC_007497.1 + 16469 0.66 0.856678
Target:  5'- uGCGUgGAcuGCGGCGGCcugcUCGAagguauccggaugaaUGCCg -3'
miRNA:   3'- gUGUAgCU--UGCCGCCGu---AGCUa--------------ACGG- -5'
33051 3' -52.1 NC_007497.1 + 4565 0.66 0.847073
Target:  5'- uGCAaCGAGCGccGCGucuuGCGUCGAUccGCCg -3'
miRNA:   3'- gUGUaGCUUGC--CGC----CGUAGCUAa-CGG- -5'
33051 3' -52.1 NC_007497.1 + 26314 0.66 0.847073
Target:  5'- gGCGUCGucGCGGCucGGCGUCcg--GCUg -3'
miRNA:   3'- gUGUAGCu-UGCCG--CCGUAGcuaaCGG- -5'
33051 3' -52.1 NC_007497.1 + 34401 0.66 0.847073
Target:  5'- cCugAUCGAGCGGCGccuGCAugUCGAUc--- -3'
miRNA:   3'- -GugUAGCUUGCCGC---CGU--AGCUAacgg -5'
33051 3' -52.1 NC_007497.1 + 31821 0.66 0.855817
Target:  5'- uGCGgccgGAGCGGCGGCGUccagaagaaCGAgacagaGCCg -3'
miRNA:   3'- gUGUag--CUUGCCGCCGUA---------GCUaa----CGG- -5'
33051 3' -52.1 NC_007497.1 + 12385 0.66 0.855817
Target:  5'- uCAUGUUGA--GGUGGagGUUGAUUGCCu -3'
miRNA:   3'- -GUGUAGCUugCCGCCg-UAGCUAACGG- -5'
33051 3' -52.1 NC_007497.1 + 3795 0.66 0.855817
Target:  5'- gGCGUgaGAAcCGGCGGCGcaUCGAUcccaucgcugaUGUCg -3'
miRNA:   3'- gUGUAg-CUU-GCCGCCGU--AGCUA-----------ACGG- -5'
33051 3' -52.1 NC_007497.1 + 42069 0.66 0.855817
Target:  5'- cCACGUUGAcgugaGGCGGCcUU--UUGCCg -3'
miRNA:   3'- -GUGUAGCUug---CCGCCGuAGcuAACGG- -5'
33051 3' -52.1 NC_007497.1 + 8482 0.66 0.855817
Target:  5'- cCGCAuuUUGcGCGGCGGC-UCag-UGCCc -3'
miRNA:   3'- -GUGU--AGCuUGCCGCCGuAGcuaACGG- -5'
33051 3' -52.1 NC_007497.1 + 25576 0.66 0.828874
Target:  5'- gCACAaCGAAUGGCacgauCAUCGAgccGCCg -3'
miRNA:   3'- -GUGUaGCUUGCCGcc---GUAGCUaa-CGG- -5'
33051 3' -52.1 NC_007497.1 + 3360 0.66 0.828874
Target:  5'- gACAUCGAaaccagccguGCGGCGcacugcgcGCGggCGAUaUGCCu -3'
miRNA:   3'- gUGUAGCU----------UGCCGC--------CGUa-GCUA-ACGG- -5'
33051 3' -52.1 NC_007497.1 + 775 0.66 0.819439
Target:  5'- gCGC-UCGAuugcaGCccauGCGGCAUCGAUcacGCCg -3'
miRNA:   3'- -GUGuAGCU-----UGc---CGCCGUAGCUAa--CGG- -5'
33051 3' -52.1 NC_007497.1 + 35816 0.77 0.255141
Target:  5'- uCGCGUCGAGCGGCuGCcgCG-UUGCUu -3'
miRNA:   3'- -GUGUAGCUUGCCGcCGuaGCuAACGG- -5'
33051 3' -52.1 NC_007497.1 + 3845 0.76 0.290878
Target:  5'- gGCGUCG-ACGuGCGGC--CGAUUGCCc -3'
miRNA:   3'- gUGUAGCuUGC-CGCCGuaGCUAACGG- -5'
33051 3' -52.1 NC_007497.1 + 32483 0.74 0.401585
Target:  5'- aCGCGUUGccgccGGCGGCGGCcgCGAc-GCCa -3'
miRNA:   3'- -GUGUAGC-----UUGCCGCCGuaGCUaaCGG- -5'
33051 3' -52.1 NC_007497.1 + 34023 0.72 0.513789
Target:  5'- --uGUCGGccGCGGCcccugccGUAUCGAUUGCCg -3'
miRNA:   3'- gugUAGCU--UGCCGc------CGUAGCUAACGG- -5'
33051 3' -52.1 NC_007497.1 + 40238 0.7 0.610661
Target:  5'- aCGCGUCGGAcguCGGCagacccgccuucacGGCGUCGAgcUGCUu -3'
miRNA:   3'- -GUGUAGCUU---GCCG--------------CCGUAGCUa-ACGG- -5'
33051 3' -52.1 NC_007497.1 + 11774 0.7 0.614063
Target:  5'- aCGCcuUCGGGCgcacuGGCGGUAUCGGUUcCCg -3'
miRNA:   3'- -GUGu-AGCUUG-----CCGCCGUAGCUAAcGG- -5'
33051 3' -52.1 NC_007497.1 + 43601 0.68 0.70442
Target:  5'- aCACAcCGGcCGGCGGCucGUCGcuuugcGUUGUCa -3'
miRNA:   3'- -GUGUaGCUuGCCGCCG--UAGC------UAACGG- -5'
33051 3' -52.1 NC_007497.1 + 4168 0.67 0.789922
Target:  5'- cCGCccCGAGCuGCGGCAacggaCGAUUcGCCg -3'
miRNA:   3'- -GUGuaGCUUGcCGCCGUa----GCUAA-CGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.