miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33051 3' -52.1 NC_007497.1 + 775 0.66 0.819439
Target:  5'- gCGC-UCGAuugcaGCccauGCGGCAUCGAUcacGCCg -3'
miRNA:   3'- -GUGuAGCU-----UGc---CGCCGUAGCUAa--CGG- -5'
33051 3' -52.1 NC_007497.1 + 3360 0.66 0.828874
Target:  5'- gACAUCGAaaccagccguGCGGCGcacugcgcGCGggCGAUaUGCCu -3'
miRNA:   3'- gUGUAGCU----------UGCCGC--------CGUa-GCUA-ACGG- -5'
33051 3' -52.1 NC_007497.1 + 3795 0.66 0.855817
Target:  5'- gGCGUgaGAAcCGGCGGCGcaUCGAUcccaucgcugaUGUCg -3'
miRNA:   3'- gUGUAg-CUU-GCCGCCGU--AGCUA-----------ACGG- -5'
33051 3' -52.1 NC_007497.1 + 3845 0.76 0.290878
Target:  5'- gGCGUCG-ACGuGCGGC--CGAUUGCCc -3'
miRNA:   3'- gUGUAGCuUGC-CGCCGuaGCUAACGG- -5'
33051 3' -52.1 NC_007497.1 + 4168 0.67 0.789922
Target:  5'- cCGCccCGAGCuGCGGCAacggaCGAUUcGCCg -3'
miRNA:   3'- -GUGuaGCUUGcCGCCGUa----GCUAA-CGG- -5'
33051 3' -52.1 NC_007497.1 + 4227 0.66 0.809795
Target:  5'- nCGCAgcUCGG--GGCGGCAugaccgUCGAcgagUGCCg -3'
miRNA:   3'- -GUGU--AGCUugCCGCCGU------AGCUa---ACGG- -5'
33051 3' -52.1 NC_007497.1 + 4258 0.7 0.636771
Target:  5'- gGCGcCGGAauUGGCGGCGaaUCGuccGUUGCCg -3'
miRNA:   3'- gUGUaGCUU--GCCGCCGU--AGC---UAACGG- -5'
33051 3' -52.1 NC_007497.1 + 4565 0.66 0.847073
Target:  5'- uGCAaCGAGCGccGCGucuuGCGUCGAUccGCCg -3'
miRNA:   3'- gUGUaGCUUGC--CGC----CGUAGCUAa-CGG- -5'
33051 3' -52.1 NC_007497.1 + 7695 0.71 0.568927
Target:  5'- aCGCAUCGGGCGG-GuCAUCGAggggGCUg -3'
miRNA:   3'- -GUGUAGCUUGCCgCcGUAGCUaa--CGG- -5'
33051 3' -52.1 NC_007497.1 + 8482 0.66 0.855817
Target:  5'- cCGCAuuUUGcGCGGCGGC-UCag-UGCCc -3'
miRNA:   3'- -GUGU--AGCuUGCCGCCGuAGcuaACGG- -5'
33051 3' -52.1 NC_007497.1 + 8699 0.69 0.65946
Target:  5'- aGCGgaagCGGGCGGgGcGCGUCGGccGCCc -3'
miRNA:   3'- gUGUa---GCUUGCCgC-CGUAGCUaaCGG- -5'
33051 3' -52.1 NC_007497.1 + 9703 0.69 0.692143
Target:  5'- gACGUCGcggcCGGCGcgccgggugugaaGCAUCGAUacuauUGCCg -3'
miRNA:   3'- gUGUAGCuu--GCCGC-------------CGUAGCUA-----ACGG- -5'
33051 3' -52.1 NC_007497.1 + 11774 0.7 0.614063
Target:  5'- aCGCcuUCGGGCgcacuGGCGGUAUCGGUUcCCg -3'
miRNA:   3'- -GUGu-AGCUUG-----CCGCCGUAGCUAAcGG- -5'
33051 3' -52.1 NC_007497.1 + 12385 0.66 0.855817
Target:  5'- uCAUGUUGA--GGUGGagGUUGAUUGCCu -3'
miRNA:   3'- -GUGUAGCUugCCGCCg-UAGCUAACGG- -5'
33051 3' -52.1 NC_007497.1 + 13086 0.69 0.67077
Target:  5'- aGCGcgGGGCGGUGGUauucauGUCGGUUGUCa -3'
miRNA:   3'- gUGUagCUUGCCGCCG------UAGCUAACGG- -5'
33051 3' -52.1 NC_007497.1 + 13347 0.69 0.663988
Target:  5'- gCGCAUCGAGCGuGaCGGUAaagcgcggaguauuuUCcAUUGCCu -3'
miRNA:   3'- -GUGUAGCUUGC-C-GCCGU---------------AGcUAACGG- -5'
33051 3' -52.1 NC_007497.1 + 14945 0.68 0.726497
Target:  5'- gGCAUCagcguCGGCGGCGaCGAUUucgagauuucgGCCa -3'
miRNA:   3'- gUGUAGcuu--GCCGCCGUaGCUAA-----------CGG- -5'
33051 3' -52.1 NC_007497.1 + 16160 0.69 0.693262
Target:  5'- uCACGacCGAACGGCGG-AUUGA--GCCa -3'
miRNA:   3'- -GUGUa-GCUUGCCGCCgUAGCUaaCGG- -5'
33051 3' -52.1 NC_007497.1 + 16469 0.66 0.856678
Target:  5'- uGCGUgGAcuGCGGCGGCcugcUCGAagguauccggaugaaUGCCg -3'
miRNA:   3'- gUGUAgCU--UGCCGCCGu---AGCUa--------------ACGG- -5'
33051 3' -52.1 NC_007497.1 + 16735 0.68 0.719911
Target:  5'- uCACG-CGAGCGGCGcgcucccggcguagcGCAUgCGcgaGUUGCCa -3'
miRNA:   3'- -GUGUaGCUUGCCGC---------------CGUA-GC---UAACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.