miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33051 5' -54.5 NC_007497.1 + 41175 0.66 0.74773
Target:  5'- gUCGGCGuu-----CGCCGCCCGcacaUCGg -3'
miRNA:   3'- -AGUCGCuaagcuuGCGGCGGGCa---AGC- -5'
33051 5' -54.5 NC_007497.1 + 38692 0.66 0.74773
Target:  5'- uUCGGCcguGAUUUucaGAAuCGCCGCCCGa--- -3'
miRNA:   3'- -AGUCG---CUAAG---CUU-GCGGCGGGCaagc -5'
33051 5' -54.5 NC_007497.1 + 21662 0.66 0.74773
Target:  5'- aUCAGCGuggGUUCGccccuauugacGACGCCGCCgcUGaUCGc -3'
miRNA:   3'- -AGUCGC---UAAGC-----------UUGCGGCGG--GCaAGC- -5'
33051 5' -54.5 NC_007497.1 + 14482 0.66 0.737173
Target:  5'- aCAGCGAccUGAACGCCaucGCaCCGaaCGg -3'
miRNA:   3'- aGUCGCUaaGCUUGCGG---CG-GGCaaGC- -5'
33051 5' -54.5 NC_007497.1 + 1159 0.66 0.737173
Target:  5'- gCAGUGAUcaUCGcgcGCGCUGCCCc-UCGu -3'
miRNA:   3'- aGUCGCUA--AGCu--UGCGGCGGGcaAGC- -5'
33051 5' -54.5 NC_007497.1 + 16890 0.66 0.726509
Target:  5'- -aGGCGGUUCGAuguGCUGCCCu---- -3'
miRNA:   3'- agUCGCUAAGCUug-CGGCGGGcaagc -5'
33051 5' -54.5 NC_007497.1 + 39693 0.66 0.725437
Target:  5'- -gGGCGGUgCcAAUGCCGCgaagcacCCGUUCGg -3'
miRNA:   3'- agUCGCUAaGcUUGCGGCG-------GGCAAGC- -5'
33051 5' -54.5 NC_007497.1 + 917 0.66 0.715749
Target:  5'- gUCAGCaagcaGAACGCCG-CgGUUCGg -3'
miRNA:   3'- -AGUCGcuaagCUUGCGGCgGgCAAGC- -5'
33051 5' -54.5 NC_007497.1 + 29544 0.66 0.715749
Target:  5'- -gAGCGGgg-GAucACGCUGCCCGauUUCGa -3'
miRNA:   3'- agUCGCUaagCU--UGCGGCGGGC--AAGC- -5'
33051 5' -54.5 NC_007497.1 + 19080 0.66 0.715749
Target:  5'- gCAGCGGcUUCGAgaGCGgCGCgaaGUUCGg -3'
miRNA:   3'- aGUCGCU-AAGCU--UGCgGCGgg-CAAGC- -5'
33051 5' -54.5 NC_007497.1 + 39833 0.66 0.704904
Target:  5'- cUCAGCGGcUgGAACGuaGCCgCGUUgGu -3'
miRNA:   3'- -AGUCGCUaAgCUUGCggCGG-GCAAgC- -5'
33051 5' -54.5 NC_007497.1 + 27614 0.66 0.693987
Target:  5'- -aGGCGAaUCGcggcucGACGCCGCCUuUUCc -3'
miRNA:   3'- agUCGCUaAGC------UUGCGGCGGGcAAGc -5'
33051 5' -54.5 NC_007497.1 + 4644 0.67 0.671982
Target:  5'- cUCGGCGGaUCGAcgcaagacGCGgCGCUCGUUg- -3'
miRNA:   3'- -AGUCGCUaAGCU--------UGCgGCGGGCAAgc -5'
33051 5' -54.5 NC_007497.1 + 27091 0.67 0.670877
Target:  5'- aCGGCGAUccugccgUCGGGCGUCGCacagucgcgcgCCGUgaagUCGg -3'
miRNA:   3'- aGUCGCUA-------AGCUUGCGGCG-----------GGCA----AGC- -5'
33051 5' -54.5 NC_007497.1 + 24538 0.67 0.660916
Target:  5'- aCGGCGg--CGAAgGCCGUCCGa--- -3'
miRNA:   3'- aGUCGCuaaGCUUgCGGCGGGCaagc -5'
33051 5' -54.5 NC_007497.1 + 38120 0.67 0.659808
Target:  5'- uUCGGUGcg-CGAGCGCgCGCCucgucccggaucaCGUUCGc -3'
miRNA:   3'- -AGUCGCuaaGCUUGCG-GCGG-------------GCAAGC- -5'
33051 5' -54.5 NC_007497.1 + 25698 0.67 0.649823
Target:  5'- cCAGCGAUgu--ACGUgCGCCCGUcCGa -3'
miRNA:   3'- aGUCGCUAagcuUGCG-GCGGGCAaGC- -5'
33051 5' -54.5 NC_007497.1 + 21406 0.67 0.649823
Target:  5'- cUAGCGAcagCGAGCugaGCCGUCCGgcgCGc -3'
miRNA:   3'- aGUCGCUaa-GCUUG---CGGCGGGCaa-GC- -5'
33051 5' -54.5 NC_007497.1 + 29001 0.67 0.649823
Target:  5'- -aGGCGAUUCGAAuCGC-GCCgGUgaucaUCGg -3'
miRNA:   3'- agUCGCUAAGCUU-GCGgCGGgCA-----AGC- -5'
33051 5' -54.5 NC_007497.1 + 41852 0.67 0.649823
Target:  5'- uUCGGaaccUCGAugGCGCCGCCCGccaucacgccagUUCGg -3'
miRNA:   3'- -AGUCgcuaAGCU--UGCGGCGGGC------------AAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.