miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33053 5' -53.7 NC_007497.1 + 43585 0.66 0.772376
Target:  5'- uCGCUCGGcGUGC-UGUaCGAGUUUCCg -3'
miRNA:   3'- cGCGAGCC-CGUGuACGaGCUUGAAGG- -5'
33053 5' -53.7 NC_007497.1 + 35054 0.66 0.762006
Target:  5'- cGCGCaUCGcGCGCAUGC-CGGcaaGCUcggCCu -3'
miRNA:   3'- -CGCG-AGCcCGUGUACGaGCU---UGAa--GG- -5'
33053 5' -53.7 NC_007497.1 + 20776 0.66 0.751496
Target:  5'- uGUGCcCGaGCGCGUGCUCGcGgUUCg -3'
miRNA:   3'- -CGCGaGCcCGUGUACGAGCuUgAAGg -5'
33053 5' -53.7 NC_007497.1 + 8623 0.66 0.729029
Target:  5'- cGCGCUCGGuaagaagccauucGCACGUcacGC-CGAACgggauagCCa -3'
miRNA:   3'- -CGCGAGCC-------------CGUGUA---CGaGCUUGaa-----GG- -5'
33053 5' -53.7 NC_007497.1 + 6321 0.66 0.726864
Target:  5'- gGCGCcacggcucggcaugUCGGGCGCgAUGCUgCGAAacaaggucaaUCCg -3'
miRNA:   3'- -CGCG--------------AGCCCGUG-UACGA-GCUUga--------AGG- -5'
33053 5' -53.7 NC_007497.1 + 17236 0.67 0.719257
Target:  5'- aCGCUCGGGC-CggGCUgaCGGACg--- -3'
miRNA:   3'- cGCGAGCCCGuGuaCGA--GCUUGaagg -5'
33053 5' -53.7 NC_007497.1 + 10716 0.67 0.708314
Target:  5'- cGCGaucauuuUCGGGaGCAUGCUUGcAGCUUgCg -3'
miRNA:   3'- -CGCg------AGCCCgUGUACGAGC-UUGAAgG- -5'
33053 5' -53.7 NC_007497.1 + 23392 0.67 0.697293
Target:  5'- cGCGCUCGcGGaUGCuuuugcUGCUCGuGCUgCCg -3'
miRNA:   3'- -CGCGAGC-CC-GUGu-----ACGAGCuUGAaGG- -5'
33053 5' -53.7 NC_007497.1 + 35142 0.67 0.697293
Target:  5'- -aGgUCGcGGCGCAgGC-CGAGCUUgCCg -3'
miRNA:   3'- cgCgAGC-CCGUGUaCGaGCUUGAA-GG- -5'
33053 5' -53.7 NC_007497.1 + 20166 0.67 0.697293
Target:  5'- uCGUUCGGGU---UGC-CGAGCgugUCCg -3'
miRNA:   3'- cGCGAGCCCGuguACGaGCUUGa--AGG- -5'
33053 5' -53.7 NC_007497.1 + 38951 0.67 0.675066
Target:  5'- cGCGCUCGGuuuuGUGCGUGCgaacgCGggUgUCg -3'
miRNA:   3'- -CGCGAGCC----CGUGUACGa----GCuuGaAGg -5'
33053 5' -53.7 NC_007497.1 + 13614 0.67 0.675066
Target:  5'- uGCGCUgGucuuGCAUcagGUGUUCGAcCUUCCg -3'
miRNA:   3'- -CGCGAgCc---CGUG---UACGAGCUuGAAGG- -5'
33053 5' -53.7 NC_007497.1 + 1714 0.68 0.652669
Target:  5'- aGCGCUCGGGCAguUuCUcgCGAGCg--- -3'
miRNA:   3'- -CGCGAGCCCGUguAcGA--GCUUGaagg -5'
33053 5' -53.7 NC_007497.1 + 38987 0.68 0.641435
Target:  5'- cCGCUCGGGCAcCGUcUUCcAGCUcuUCCg -3'
miRNA:   3'- cGCGAGCCCGU-GUAcGAGcUUGA--AGG- -5'
33053 5' -53.7 NC_007497.1 + 38232 0.68 0.639187
Target:  5'- gGCGCUCaGGCGCGccacggucgccgGCgCGAACgugaUCCg -3'
miRNA:   3'- -CGCGAGcCCGUGUa-----------CGaGCUUGa---AGG- -5'
33053 5' -53.7 NC_007497.1 + 14774 0.68 0.630193
Target:  5'- -aGCUCGGGCAUggugGUGauCUCGuucauGCUUCa -3'
miRNA:   3'- cgCGAGCCCGUG----UAC--GAGCu----UGAAGg -5'
33053 5' -53.7 NC_007497.1 + 23825 0.68 0.618952
Target:  5'- -aGCaCGGGCuccGCGUGCUCGAucagacguuGCU-CCa -3'
miRNA:   3'- cgCGaGCCCG---UGUACGAGCU---------UGAaGG- -5'
33053 5' -53.7 NC_007497.1 + 23578 0.68 0.607723
Target:  5'- cGCGCUgcUGGGCGCG-GCggCGGGCg-CCg -3'
miRNA:   3'- -CGCGA--GCCCGUGUaCGa-GCUUGaaGG- -5'
33053 5' -53.7 NC_007497.1 + 3142 0.69 0.585341
Target:  5'- cGCGCUCGgacGGCGCcgGCcagCGcGCUUUUg -3'
miRNA:   3'- -CGCGAGC---CCGUGuaCGa--GCuUGAAGG- -5'
33053 5' -53.7 NC_007497.1 + 34665 0.69 0.574207
Target:  5'- cGCGCUCGcGCGCcUGCgucgCGAucgcuACUUCg -3'
miRNA:   3'- -CGCGAGCcCGUGuACGa---GCU-----UGAAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.