miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33060 3' -44.4 NC_007497.1 + 29723 0.7 0.962801
Target:  5'- -cGGAUGCGAaugcACCAucGCAACGAuuucccccaugucuuCGGCg -3'
miRNA:   3'- uuUCUACGUU----UGGU--UGUUGCUu--------------GUCG- -5'
33060 3' -44.4 NC_007497.1 + 20258 0.7 0.964012
Target:  5'- ---aGUGCGGAUCGGCAaauggaauacgcggcGCGAugGGCg -3'
miRNA:   3'- uuucUACGUUUGGUUGU---------------UGCUugUCG- -5'
33060 3' -44.4 NC_007497.1 + 41816 0.69 0.970009
Target:  5'- -uGGAUGCuguuggaggaaGGugCGACAGCGaAGCAGUu -3'
miRNA:   3'- uuUCUACG-----------UUugGUUGUUGC-UUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 1969 0.69 0.970009
Target:  5'- ----cUGCGGGCCGGCAcaguuucaaGCGAagcACGGCa -3'
miRNA:   3'- uuucuACGUUUGGUUGU---------UGCU---UGUCG- -5'
33060 3' -44.4 NC_007497.1 + 223 0.69 0.970009
Target:  5'- -cAGAcgcucUGCAAaacgcACCAcgACAGCGAaaaGCAGCg -3'
miRNA:   3'- uuUCU-----ACGUU-----UGGU--UGUUGCU---UGUCG- -5'
33060 3' -44.4 NC_007497.1 + 10199 0.69 0.973049
Target:  5'- --uGGUGCGAGCaagAGCAAuuaugcugcgaucCGAGCGGCa -3'
miRNA:   3'- uuuCUACGUUUGg--UUGUU-------------GCUUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 23729 0.69 0.973372
Target:  5'- ---cGUGCGcucaacgaGGCCGACAACGGcCGGCc -3'
miRNA:   3'- uuucUACGU--------UUGGUUGUUGCUuGUCG- -5'
33060 3' -44.4 NC_007497.1 + 40214 0.69 0.973372
Target:  5'- cAAGAUcgcggcagcGCAGAUgGGC-GCGAACGGCg -3'
miRNA:   3'- uUUCUA---------CGUUUGgUUGuUGCUUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 39634 0.69 0.976454
Target:  5'- -cGGcgGCAGACaucACGuCGGACGGCa -3'
miRNA:   3'- uuUCuaCGUUUGgu-UGUuGCUUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 40979 0.69 0.97845
Target:  5'- -----cGCGAugGCCGGCGACGAgauccugaugggugACGGCg -3'
miRNA:   3'- uuucuaCGUU--UGGUUGUUGCU--------------UGUCG- -5'
33060 3' -44.4 NC_007497.1 + 17096 0.69 0.978996
Target:  5'- -cAGAUGCGGcgcggccugcuuGCCAgccugcgcagaacACAuCGAACGGCg -3'
miRNA:   3'- uuUCUACGUU------------UGGU-------------UGUuGCUUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 19907 0.69 0.979266
Target:  5'- cGAGucagGcCAGACCGucguGCGAGCAGCg -3'
miRNA:   3'- uUUCua--C-GUUUGGUugu-UGCUUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 14618 0.69 0.979266
Target:  5'- cGAAGuagucGCGGAgCGACAugcCGGGCAGCg -3'
miRNA:   3'- -UUUCua---CGUUUgGUUGUu--GCUUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 27985 0.69 0.979266
Target:  5'- --cGAUGUucACCGuguCGGCGAuCAGCg -3'
miRNA:   3'- uuuCUACGuuUGGUu--GUUGCUuGUCG- -5'
33060 3' -44.4 NC_007497.1 + 13493 0.69 0.979266
Target:  5'- -cAGGUGCAGACCG-CGAUauuCGGCu -3'
miRNA:   3'- uuUCUACGUUUGGUuGUUGcuuGUCG- -5'
33060 3' -44.4 NC_007497.1 + 7858 0.68 0.98108
Target:  5'- --cGAUGCAAauacccgcuucucaGCCGGCAACu--CGGCg -3'
miRNA:   3'- uuuCUACGUU--------------UGGUUGUUGcuuGUCG- -5'
33060 3' -44.4 NC_007497.1 + 36446 0.68 0.98182
Target:  5'- -cGGAgucGCcGAUCAGCGAgGAGCGGUa -3'
miRNA:   3'- uuUCUa--CGuUUGGUUGUUgCUUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 16621 0.68 0.982062
Target:  5'- cAGGGAUGCAcccgaaugucaaaauGCCGGCGuccGCGAACuuGCg -3'
miRNA:   3'- -UUUCUACGUu--------------UGGUUGU---UGCUUGu-CG- -5'
33060 3' -44.4 NC_007497.1 + 34569 0.68 0.984131
Target:  5'- --uGA-GCGAGCCuGCG-CGGGCGGCc -3'
miRNA:   3'- uuuCUaCGUUUGGuUGUuGCUUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 40118 0.68 0.986212
Target:  5'- ---cGUGCAGGCCGcgcugaacaaggGCGA-GGACAGCg -3'
miRNA:   3'- uuucUACGUUUGGU------------UGUUgCUUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.