miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33063 3' -60.2 NC_007497.1 + 25858 1.09 0.000225
Target:  5'- aAAUGCGGCCGCCGUGCAGACCGUCGCg -3'
miRNA:   3'- -UUACGCCGGCGGCACGUCUGGCAGCG- -5'
33063 3' -60.2 NC_007497.1 + 595 0.79 0.050585
Target:  5'- uAUGCGGCUGCauuacGCAGAUCGUCGCc -3'
miRNA:   3'- uUACGCCGGCGgca--CGUCUGGCAGCG- -5'
33063 3' -60.2 NC_007497.1 + 23628 0.75 0.087017
Target:  5'- --cGCGGCCGCCGgccgugacccacUGCGGccgGCCGUUGUc -3'
miRNA:   3'- uuaCGCCGGCGGC------------ACGUC---UGGCAGCG- -5'
33063 3' -60.2 NC_007497.1 + 34585 0.75 0.089508
Target:  5'- --gGCGGCCGCCGUuuGCGcGACCGcggcaCGCu -3'
miRNA:   3'- uuaCGCCGGCGGCA--CGU-CUGGCa----GCG- -5'
33063 3' -60.2 NC_007497.1 + 17204 0.74 0.115169
Target:  5'- --cGCGGCCGCCccGCAG-CCGcccgCGCa -3'
miRNA:   3'- uuaCGCCGGCGGcaCGUCuGGCa---GCG- -5'
33063 3' -60.2 NC_007497.1 + 3523 0.73 0.125155
Target:  5'- --gGCGGCCGCgGUGagGGACgGUgGCg -3'
miRNA:   3'- uuaCGCCGGCGgCACg-UCUGgCAgCG- -5'
33063 3' -60.2 NC_007497.1 + 40126 0.73 0.135938
Target:  5'- --cGCGGCga-CGUGCAGGCCG-CGCu -3'
miRNA:   3'- uuaCGCCGgcgGCACGUCUGGCaGCG- -5'
33063 3' -60.2 NC_007497.1 + 2609 0.72 0.14557
Target:  5'- --cGCGGCCGCCGgcgcgcacgcccggGCAGAaguggcaggaccgcaUGUCGCa -3'
miRNA:   3'- uuaCGCCGGCGGCa-------------CGUCUg--------------GCAGCG- -5'
33063 3' -60.2 NC_007497.1 + 9101 0.71 0.16898
Target:  5'- gGGUGCgcgGGCUGCgGUGCAGGCCGg--- -3'
miRNA:   3'- -UUACG---CCGGCGgCACGUCUGGCagcg -5'
33063 3' -60.2 NC_007497.1 + 34638 0.71 0.173584
Target:  5'- --gGCGGCCGcCCGcGCAGGCuCGcucaugCGCa -3'
miRNA:   3'- uuaCGCCGGC-GGCaCGUCUG-GCa-----GCG- -5'
33063 3' -60.2 NC_007497.1 + 39792 0.71 0.178298
Target:  5'- --cGCGaCCGaaGUGCAGACCGaguUCGCc -3'
miRNA:   3'- uuaCGCcGGCggCACGUCUGGC---AGCG- -5'
33063 3' -60.2 NC_007497.1 + 23829 0.71 0.183127
Target:  5'- --cGCGGCCGCCGUGa--GCU-UCGCa -3'
miRNA:   3'- uuaCGCCGGCGGCACgucUGGcAGCG- -5'
33063 3' -60.2 NC_007497.1 + 2332 0.71 0.19313
Target:  5'- -uUGaUGGCaCGCCGUGCGaagcgcccGACCGUgGCc -3'
miRNA:   3'- uuAC-GCCG-GCGGCACGU--------CUGGCAgCG- -5'
33063 3' -60.2 NC_007497.1 + 4961 0.7 0.196743
Target:  5'- cGGUGCGGCCGUCG-GCGGAggcaacagcaggagUCGUUGg -3'
miRNA:   3'- -UUACGCCGGCGGCaCGUCU--------------GGCAGCg -5'
33063 3' -60.2 NC_007497.1 + 3839 0.7 0.20361
Target:  5'- aAAUGCGGCguCGaCGUGCGGccgauugcCCGUCGCc -3'
miRNA:   3'- -UUACGCCG--GCgGCACGUCu-------GGCAGCG- -5'
33063 3' -60.2 NC_007497.1 + 13628 0.7 0.214579
Target:  5'- --aGCgGGCCGCCGcauGGGCCGcCGCa -3'
miRNA:   3'- uuaCG-CCGGCGGCacgUCUGGCaGCG- -5'
33063 3' -60.2 NC_007497.1 + 39250 0.7 0.219678
Target:  5'- cGAUGCGcgcgaugaaggucGCCGCCagcgaguaagcGU-CGGGCCGUCGCg -3'
miRNA:   3'- -UUACGC-------------CGGCGG-----------CAcGUCUGGCAGCG- -5'
33063 3' -60.2 NC_007497.1 + 19725 0.7 0.220251
Target:  5'- ---uCGGCaUGCCGUGCGGgcaucgggcauaGCCGUCGUc -3'
miRNA:   3'- uuacGCCG-GCGGCACGUC------------UGGCAGCG- -5'
33063 3' -60.2 NC_007497.1 + 2279 0.69 0.23198
Target:  5'- --gGCGGCCuGCCGUgGCGaGCCGU-GCu -3'
miRNA:   3'- uuaCGCCGG-CGGCA-CGUcUGGCAgCG- -5'
33063 3' -60.2 NC_007497.1 + 32453 0.69 0.238039
Target:  5'- --cGUGGCCGCCGgucGCAaGAuggaacCCGUaCGCg -3'
miRNA:   3'- uuaCGCCGGCGGCa--CGU-CU------GGCA-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.