miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33063 3' -60.2 NC_007497.1 + 595 0.79 0.050585
Target:  5'- uAUGCGGCUGCauuacGCAGAUCGUCGCc -3'
miRNA:   3'- uUACGCCGGCGgca--CGUCUGGCAGCG- -5'
33063 3' -60.2 NC_007497.1 + 1913 0.67 0.313641
Target:  5'- aGAUGCaccGGCCGCUG-GUAacGACCGUCu- -3'
miRNA:   3'- -UUACG---CCGGCGGCaCGU--CUGGCAGcg -5'
33063 3' -60.2 NC_007497.1 + 1980 0.67 0.337188
Target:  5'- cGUGCaGCUGCC-UGCGGGCCG--GCa -3'
miRNA:   3'- uUACGcCGGCGGcACGUCUGGCagCG- -5'
33063 3' -60.2 NC_007497.1 + 2279 0.69 0.23198
Target:  5'- --gGCGGCCuGCCGUgGCGaGCCGU-GCu -3'
miRNA:   3'- uuaCGCCGG-CGGCA-CGUcUGGCAgCG- -5'
33063 3' -60.2 NC_007497.1 + 2332 0.71 0.19313
Target:  5'- -uUGaUGGCaCGCCGUGCGaagcgcccGACCGUgGCc -3'
miRNA:   3'- uuAC-GCCG-GCGGCACGU--------CUGGCAgCG- -5'
33063 3' -60.2 NC_007497.1 + 2609 0.72 0.14557
Target:  5'- --cGCGGCCGCCGgcgcgcacgcccggGCAGAaguggcaggaccgcaUGUCGCa -3'
miRNA:   3'- uuaCGCCGGCGGCa-------------CGUCUg--------------GCAGCG- -5'
33063 3' -60.2 NC_007497.1 + 3523 0.73 0.125155
Target:  5'- --gGCGGCCGCgGUGagGGACgGUgGCg -3'
miRNA:   3'- uuaCGCCGGCGgCACg-UCUGgCAgCG- -5'
33063 3' -60.2 NC_007497.1 + 3839 0.7 0.20361
Target:  5'- aAAUGCGGCguCGaCGUGCGGccgauugcCCGUCGCc -3'
miRNA:   3'- -UUACGCCG--GCgGCACGUCu-------GGCAGCG- -5'
33063 3' -60.2 NC_007497.1 + 4593 0.68 0.306074
Target:  5'- cGUGCGGuCCgGUCGUGCGGcACCuacaacagcGUCGUu -3'
miRNA:   3'- uUACGCC-GG-CGGCACGUC-UGG---------CAGCG- -5'
33063 3' -60.2 NC_007497.1 + 4961 0.7 0.196743
Target:  5'- cGGUGCGGCCGUCG-GCGGAggcaacagcaggagUCGUUGg -3'
miRNA:   3'- -UUACGCCGGCGGCaCGUCU--------------GGCAGCg -5'
33063 3' -60.2 NC_007497.1 + 8533 0.66 0.406082
Target:  5'- aAAUGCGGCugauCGUCGgcUGCGGAacuccagUGUCGCg -3'
miRNA:   3'- -UUACGCCG----GCGGC--ACGUCUg------GCAGCG- -5'
33063 3' -60.2 NC_007497.1 + 9101 0.71 0.16898
Target:  5'- gGGUGCgcgGGCUGCgGUGCAGGCCGg--- -3'
miRNA:   3'- -UUACG---CCGGCGgCACGUCUGGCagcg -5'
33063 3' -60.2 NC_007497.1 + 11756 0.66 0.387157
Target:  5'- --cGCGcGCCcggcuacucccgGCCGUGCcgguuccGGGCCG-CGCg -3'
miRNA:   3'- uuaCGC-CGG------------CGGCACG-------UCUGGCaGCG- -5'
33063 3' -60.2 NC_007497.1 + 13628 0.7 0.214579
Target:  5'- --aGCgGGCCGCCGcauGGGCCGcCGCa -3'
miRNA:   3'- uuaCG-CCGGCGGCacgUCUGGCaGCG- -5'
33063 3' -60.2 NC_007497.1 + 14517 0.66 0.361996
Target:  5'- cAUGUGGCCgggaauGCCGgGCc-GCCGUCGUu -3'
miRNA:   3'- uUACGCCGG------CGGCaCGucUGGCAGCG- -5'
33063 3' -60.2 NC_007497.1 + 16347 0.67 0.345318
Target:  5'- cGGUGC-GCCGCUGUugaacggagcgcGCcGGCCGUCGg -3'
miRNA:   3'- -UUACGcCGGCGGCA------------CGuCUGGCAGCg -5'
33063 3' -60.2 NC_007497.1 + 17204 0.74 0.115169
Target:  5'- --cGCGGCCGCCccGCAG-CCGcccgCGCa -3'
miRNA:   3'- uuaCGCCGGCGGcaCGUCuGGCa---GCG- -5'
33063 3' -60.2 NC_007497.1 + 19725 0.7 0.220251
Target:  5'- ---uCGGCaUGCCGUGCGGgcaucgggcauaGCCGUCGUc -3'
miRNA:   3'- uuacGCCG-GCGGCACGUC------------UGGCAGCG- -5'
33063 3' -60.2 NC_007497.1 + 20241 0.66 0.396997
Target:  5'- --aGCaGGCCGCUGgcaGCAGugCGgaUCGg -3'
miRNA:   3'- uuaCG-CCGGCGGCa--CGUCugGC--AGCg -5'
33063 3' -60.2 NC_007497.1 + 20419 0.67 0.336382
Target:  5'- uGAUGUGG-CGCUGguggaaUGCAGACaguccuuCGUCGCg -3'
miRNA:   3'- -UUACGCCgGCGGC------ACGUCUG-------GCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.