miRNA display CGI


Results 1 - 20 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33063 3' -60.2 NC_007497.1 + 23628 0.75 0.087017
Target:  5'- --cGCGGCCGCCGgccgugacccacUGCGGccgGCCGUUGUc -3'
miRNA:   3'- uuaCGCCGGCGGC------------ACGUC---UGGCAGCG- -5'
33063 3' -60.2 NC_007497.1 + 42820 0.66 0.406082
Target:  5'- -cUGCcccgacGCCGCCGcgaUGCGGcguuCCGUCGUc -3'
miRNA:   3'- uuACGc-----CGGCGGC---ACGUCu---GGCAGCG- -5'
33063 3' -60.2 NC_007497.1 + 23132 0.66 0.406082
Target:  5'- -cUGCuGGCCGgCGaUGCGGGCacgGUCaGCg -3'
miRNA:   3'- uuACG-CCGGCgGC-ACGUCUGg--CAG-CG- -5'
33063 3' -60.2 NC_007497.1 + 29266 0.66 0.396997
Target:  5'- --gGCGGCCGUacaUGUGaugcgcgaaCAuGCCGUCGCc -3'
miRNA:   3'- uuaCGCCGGCG---GCAC---------GUcUGGCAGCG- -5'
33063 3' -60.2 NC_007497.1 + 20241 0.66 0.396997
Target:  5'- --aGCaGGCCGCUGgcaGCAGugCGgaUCGg -3'
miRNA:   3'- uuaCG-CCGGCGGCa--CGUCugGC--AGCg -5'
33063 3' -60.2 NC_007497.1 + 23194 0.67 0.345318
Target:  5'- --cGCGGCCGagcaCGUcggcaaGCAGAUcgagggCGUCGCc -3'
miRNA:   3'- uuaCGCCGGCg---GCA------CGUCUG------GCAGCG- -5'
33063 3' -60.2 NC_007497.1 + 34922 0.67 0.345318
Target:  5'- -cUGU--UCGCCGauucgaGCGGGCCGUCGCg -3'
miRNA:   3'- uuACGccGGCGGCa-----CGUCUGGCAGCG- -5'
33063 3' -60.2 NC_007497.1 + 42763 0.67 0.326829
Target:  5'- cAGUGguUGGCCGCCGUGauacaacgccccguCAGGggcuUCGUCGCc -3'
miRNA:   3'- -UUAC--GCCGGCGGCAC--------------GUCU----GGCAGCG- -5'
33063 3' -60.2 NC_007497.1 + 26775 0.67 0.320572
Target:  5'- ---cCGGCCGCUGcugaaucUGCGcGCCGUCGUc -3'
miRNA:   3'- uuacGCCGGCGGC-------ACGUcUGGCAGCG- -5'
33063 3' -60.2 NC_007497.1 + 40750 0.67 0.313641
Target:  5'- --gGCGGCgGCCGUcucuuccgagauGCcGGCCcGUUGCg -3'
miRNA:   3'- uuaCGCCGgCGGCA------------CGuCUGG-CAGCG- -5'
33063 3' -60.2 NC_007497.1 + 27584 0.68 0.309084
Target:  5'- --cGuCGGCCGCCGacuggaucacgcaguUGCAGGCgaaUCGCg -3'
miRNA:   3'- uuaC-GCCGGCGGC---------------ACGUCUGgc-AGCG- -5'
33063 3' -60.2 NC_007497.1 + 34585 0.75 0.089508
Target:  5'- --gGCGGCCGCCGUuuGCGcGACCGcggcaCGCu -3'
miRNA:   3'- uuaCGCCGGCGGCA--CGU-CUGGCa----GCG- -5'
33063 3' -60.2 NC_007497.1 + 17204 0.74 0.115169
Target:  5'- --cGCGGCCGCCccGCAG-CCGcccgCGCa -3'
miRNA:   3'- uuaCGCCGGCGGcaCGUCuGGCa---GCG- -5'
33063 3' -60.2 NC_007497.1 + 3839 0.7 0.20361
Target:  5'- aAAUGCGGCguCGaCGUGCGGccgauugcCCGUCGCc -3'
miRNA:   3'- -UUACGCCG--GCgGCACGUCu-------GGCAGCG- -5'
33063 3' -60.2 NC_007497.1 + 13628 0.7 0.214579
Target:  5'- --aGCgGGCCGCCGcauGGGCCGcCGCa -3'
miRNA:   3'- uuaCG-CCGGCGGCacgUCUGGCaGCG- -5'
33063 3' -60.2 NC_007497.1 + 32453 0.69 0.238039
Target:  5'- --cGUGGCCGCCGgucGCAaGAuggaacCCGUaCGCg -3'
miRNA:   3'- uuaCGCCGGCGGCa--CGU-CU------GGCA-GCG- -5'
33063 3' -60.2 NC_007497.1 + 34623 0.69 0.250554
Target:  5'- -cUGCGGCCaaGCCG-GCGG-UCGcCGCg -3'
miRNA:   3'- uuACGCCGG--CGGCaCGUCuGGCaGCG- -5'
33063 3' -60.2 NC_007497.1 + 31211 0.68 0.298647
Target:  5'- -uUGCGGCCcCCuugaccUGCAGuGCCGUCGa -3'
miRNA:   3'- uuACGCCGGcGGc-----ACGUC-UGGCAGCg -5'
33063 3' -60.2 NC_007497.1 + 8533 0.66 0.406082
Target:  5'- aAAUGCGGCugauCGUCGgcUGCGGAacuccagUGUCGCg -3'
miRNA:   3'- -UUACGCCG----GCGGC--ACGUCUg------GCAGCG- -5'
33063 3' -60.2 NC_007497.1 + 595 0.79 0.050585
Target:  5'- uAUGCGGCUGCauuacGCAGAUCGUCGCc -3'
miRNA:   3'- uUACGCCGGCGgca--CGUCUGGCAGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.