miRNA display CGI


Results 1 - 20 of 25 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33064 5' -59 NC_007497.1 + 40558 0.66 0.466644
Target:  5'- cGGGCGC-UGgcgaaGACGUUG-CAGCGUc -3'
miRNA:   3'- -UCCGCGcACag---CUGCGACuGUCGCGu -5'
33064 5' -59 NC_007497.1 + 40816 0.66 0.44692
Target:  5'- cGGCGCGag-CGuCGCUG-CAGCGg- -3'
miRNA:   3'- uCCGCGCacaGCuGCGACuGUCGCgu -5'
33064 5' -59 NC_007497.1 + 33439 0.66 0.44692
Target:  5'- cAGGCGCa--UUGACGCcGAUAcGCGCGa -3'
miRNA:   3'- -UCCGCGcacAGCUGCGaCUGU-CGCGU- -5'
33064 5' -59 NC_007497.1 + 31325 0.66 0.437234
Target:  5'- cGGUggGCGUGUCc-UGCUgGGCGGCGCu -3'
miRNA:   3'- uCCG--CGCACAGcuGCGA-CUGUCGCGu -5'
33064 5' -59 NC_007497.1 + 29180 0.66 0.418229
Target:  5'- cGGGCGCGUGcaUCGGCugGCUguuucgucGACAGC-CGa -3'
miRNA:   3'- -UCCGCGCAC--AGCUG--CGA--------CUGUCGcGU- -5'
33064 5' -59 NC_007497.1 + 15917 0.66 0.418229
Target:  5'- aGGGUGgGUGcUCGGCucGCauaUGGCAGCGUu -3'
miRNA:   3'- -UCCGCgCAC-AGCUG--CG---ACUGUCGCGu -5'
33064 5' -59 NC_007497.1 + 35645 0.67 0.408918
Target:  5'- cGGCGUG-GcCGACGC-GAUcGCGCGc -3'
miRNA:   3'- uCCGCGCaCaGCUGCGaCUGuCGCGU- -5'
33064 5' -59 NC_007497.1 + 3804 0.67 0.399736
Target:  5'- cAGGCGCucgGUCGACuGaaGGCcGGCGCGa -3'
miRNA:   3'- -UCCGCGca-CAGCUG-CgaCUG-UCGCGU- -5'
33064 5' -59 NC_007497.1 + 27146 0.67 0.399736
Target:  5'- cGGCGCGguUGUCG-UGUUGGacaaGGCGCc -3'
miRNA:   3'- uCCGCGC--ACAGCuGCGACUg---UCGCGu -5'
33064 5' -59 NC_007497.1 + 4961 0.67 0.372996
Target:  5'- cGGUGCGgccGUCGGCGgaGGCAacaGCAg -3'
miRNA:   3'- uCCGCGCa--CAGCUGCgaCUGUcg-CGU- -5'
33064 5' -59 NC_007497.1 + 29782 0.67 0.364357
Target:  5'- cGGGCGCGagcgcgaacugGUCGGuCGgaGuCGGCGCGa -3'
miRNA:   3'- -UCCGCGCa----------CAGCU-GCgaCuGUCGCGU- -5'
33064 5' -59 NC_007497.1 + 33025 0.68 0.347498
Target:  5'- -cGCGCGcGUUGuCGCccaucGACAGCGCGg -3'
miRNA:   3'- ucCGCGCaCAGCuGCGa----CUGUCGCGU- -5'
33064 5' -59 NC_007497.1 + 27008 0.68 0.347498
Target:  5'- cGGCGCGcgacUGUgCGACGCccGACGGCa-- -3'
miRNA:   3'- uCCGCGC----ACA-GCUGCGa-CUGUCGcgu -5'
33064 5' -59 NC_007497.1 + 40596 0.68 0.339281
Target:  5'- cGGCGCGcGccaUCGACGCUucGAUgAGCGCc -3'
miRNA:   3'- uCCGCGCaC---AGCUGCGA--CUG-UCGCGu -5'
33064 5' -59 NC_007497.1 + 23388 0.68 0.331205
Target:  5'- uGGGcCGCG-GUgCGGCGUUGuucuuCGGCGCGc -3'
miRNA:   3'- -UCC-GCGCaCA-GCUGCGACu----GUCGCGU- -5'
33064 5' -59 NC_007497.1 + 16960 0.68 0.331205
Target:  5'- cGGGCGgGU-UCGAauCGCUGAaaGGCGCAu -3'
miRNA:   3'- -UCCGCgCAcAGCU--GCGACUg-UCGCGU- -5'
33064 5' -59 NC_007497.1 + 30817 0.68 0.326427
Target:  5'- cGGCuGCGaacgugaaugucccaUGUUGGggccaGCUGACAGCGCGu -3'
miRNA:   3'- uCCG-CGC---------------ACAGCUg----CGACUGUCGCGU- -5'
33064 5' -59 NC_007497.1 + 33576 0.68 0.31548
Target:  5'- cGGGCGCGUGcugCuGCGCUGGguCAGaaaGCAu -3'
miRNA:   3'- -UCCGCGCACa--GcUGCGACU--GUCg--CGU- -5'
33064 5' -59 NC_007497.1 + 22811 0.69 0.300326
Target:  5'- aAGGCGCGUGg---UGCUGACAuCGCu -3'
miRNA:   3'- -UCCGCGCACagcuGCGACUGUcGCGu -5'
33064 5' -59 NC_007497.1 + 2957 0.7 0.271719
Target:  5'- cGGCGCGUGUgGACGgC-GACGGUccgauuaaGCAg -3'
miRNA:   3'- uCCGCGCACAgCUGC-GaCUGUCG--------CGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.