miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33065 3' -62.2 NC_007497.1 + 26383 1.09 0.000223
Target:  5'- gCCGGACGCCGAGCCGCGACGACGCCAc -3'
miRNA:   3'- -GGCCUGCGGCUCGGCGCUGCUGCGGU- -5'
33065 3' -62.2 NC_007497.1 + 29462 0.81 0.031934
Target:  5'- aCCaGGACGCCGguuuucucgacgucGGCCGCGACGugGCg- -3'
miRNA:   3'- -GG-CCUGCGGC--------------UCGGCGCUGCugCGgu -5'
33065 3' -62.2 NC_007497.1 + 36830 0.79 0.043808
Target:  5'- gCGGGCGUCGAGCCG-GACGACGaCGa -3'
miRNA:   3'- gGCCUGCGGCUCGGCgCUGCUGCgGU- -5'
33065 3' -62.2 NC_007497.1 + 15257 0.77 0.064599
Target:  5'- gCGGACGCCGGccgagcGCCGCGA-GGCGCgCAu -3'
miRNA:   3'- gGCCUGCGGCU------CGGCGCUgCUGCG-GU- -5'
33065 3' -62.2 NC_007497.1 + 9637 0.77 0.064599
Target:  5'- cCCGGcGCGCCG-GCCGCGACGuCGgCu -3'
miRNA:   3'- -GGCC-UGCGGCuCGGCGCUGCuGCgGu -5'
33065 3' -62.2 NC_007497.1 + 13872 0.75 0.082701
Target:  5'- aCgGGACGCCGcaugGGCCGCcgcaGGgGACGCCGc -3'
miRNA:   3'- -GgCCUGCGGC----UCGGCG----CUgCUGCGGU- -5'
33065 3' -62.2 NC_007497.1 + 27681 0.75 0.084989
Target:  5'- gCGG-CGUCGAGCCGCGAUu-CGCCu -3'
miRNA:   3'- gGCCuGCGGCUCGGCGCUGcuGCGGu -5'
33065 3' -62.2 NC_007497.1 + 866 0.75 0.09222
Target:  5'- aCGGGCGCCGucGgCGUGAuCGAUGCCGc -3'
miRNA:   3'- gGCCUGCGGCu-CgGCGCU-GCUGCGGU- -5'
33065 3' -62.2 NC_007497.1 + 39429 0.74 0.094758
Target:  5'- gCCGGACauGCCGgauguGGCgGCGAacuCGACGCCGa -3'
miRNA:   3'- -GGCCUG--CGGC-----UCGgCGCU---GCUGCGGU- -5'
33065 3' -62.2 NC_007497.1 + 42895 0.74 0.097361
Target:  5'- aCGGaACGCCGcaUCGCGGCGGCGUCGg -3'
miRNA:   3'- gGCC-UGCGGCucGGCGCUGCUGCGGU- -5'
33065 3' -62.2 NC_007497.1 + 13827 0.74 0.097361
Target:  5'- aCgGGACGCCGcaggGGCCGCcgcaGGgGGCGCCGc -3'
miRNA:   3'- -GgCCUGCGGC----UCGGCG----CUgCUGCGGU- -5'
33065 3' -62.2 NC_007497.1 + 2438 0.73 0.114454
Target:  5'- gCCGGuGCGCCGcugGGCguucgCGCGGCGACGCg- -3'
miRNA:   3'- -GGCC-UGCGGC---UCG-----GCGCUGCUGCGgu -5'
33065 3' -62.2 NC_007497.1 + 39258 0.73 0.120427
Target:  5'- uCCGGA-GCCGAuGCgCGCGAUGAaggucgcCGCCAg -3'
miRNA:   3'- -GGCCUgCGGCU-CG-GCGCUGCU-------GCGGU- -5'
33065 3' -62.2 NC_007497.1 + 13742 0.73 0.120749
Target:  5'- -gGGACGCCGcaggGGCCGCacGgGACGCCGc -3'
miRNA:   3'- ggCCUGCGGC----UCGGCGc-UgCUGCGGU- -5'
33065 3' -62.2 NC_007497.1 + 13676 0.73 0.120749
Target:  5'- -gGGACGCCGcaggGGCCGCacGgGACGCCGc -3'
miRNA:   3'- ggCCUGCGGC----UCGGCGc-UgCUGCGGU- -5'
33065 3' -62.2 NC_007497.1 + 35954 0.72 0.134316
Target:  5'- aUGGAUGCCGAacGCCGCGGCcGCGgCu -3'
miRNA:   3'- gGCCUGCGGCU--CGGCGCUGcUGCgGu -5'
33065 3' -62.2 NC_007497.1 + 34757 0.72 0.137193
Target:  5'- gCGGcCGCCGAGCgcgaaguagcgauCGCGACGcaggcgcgcgagcGCGCCGa -3'
miRNA:   3'- gGCCuGCGGCUCG-------------GCGCUGC-------------UGCGGU- -5'
33065 3' -62.2 NC_007497.1 + 13707 0.72 0.137921
Target:  5'- aUGGGuCGCCGcacgGGCCGCaGGgGACGCCGc -3'
miRNA:   3'- gGCCU-GCGGC----UCGGCG-CUgCUGCGGU- -5'
33065 3' -62.2 NC_007497.1 + 13641 0.72 0.137921
Target:  5'- aUGGGcCGCCGcacgGGCCGCaGGgGACGCCGc -3'
miRNA:   3'- gGCCU-GCGGC----UCGGCG-CUgCUGCGGU- -5'
33065 3' -62.2 NC_007497.1 + 4243 0.72 0.152843
Target:  5'- cCUGGcCGCCGAGCaucaCGCGAUGAgcggcgugugcguCGCCGa -3'
miRNA:   3'- -GGCCuGCGGCUCG----GCGCUGCU-------------GCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.