miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33065 3' -62.2 NC_007497.1 + 167 0.66 0.363235
Target:  5'- aCUGGuuGuuGugaAGgCGCGACGACGCaCAa -3'
miRNA:   3'- -GGCCugCggC---UCgGCGCUGCUGCG-GU- -5'
33065 3' -62.2 NC_007497.1 + 866 0.75 0.09222
Target:  5'- aCGGGCGCCGucGgCGUGAuCGAUGCCGc -3'
miRNA:   3'- gGCCUGCGGCu-CgGCGCU-GCUGCGGU- -5'
33065 3' -62.2 NC_007497.1 + 2438 0.73 0.114454
Target:  5'- gCCGGuGCGCCGcugGGCguucgCGCGGCGACGCg- -3'
miRNA:   3'- -GGCC-UGCGGC---UCG-----GCGCUGCUGCGgu -5'
33065 3' -62.2 NC_007497.1 + 2540 0.68 0.287772
Target:  5'- cCCGGgcgugcGCGCCGgcGGCCGCGGCGcauccuUGCg- -3'
miRNA:   3'- -GGCC------UGCGGC--UCGGCGCUGCu-----GCGgu -5'
33065 3' -62.2 NC_007497.1 + 2618 0.68 0.267674
Target:  5'- -aGGauGCGCCGcGGCCGcCGGCGcgcACGCCc -3'
miRNA:   3'- ggCC--UGCGGC-UCGGC-GCUGC---UGCGGu -5'
33065 3' -62.2 NC_007497.1 + 2843 0.66 0.339226
Target:  5'- aCCGGaACGCuCGGGCUGgccaucCGACGGagucgGCCAu -3'
miRNA:   3'- -GGCC-UGCG-GCUCGGC------GCUGCUg----CGGU- -5'
33065 3' -62.2 NC_007497.1 + 3404 0.66 0.347099
Target:  5'- cCUGGAgCGCCGcacGCCGaugGACGGCGaUCAg -3'
miRNA:   3'- -GGCCU-GCGGCu--CGGCg--CUGCUGC-GGU- -5'
33065 3' -62.2 NC_007497.1 + 4243 0.72 0.152843
Target:  5'- cCUGGcCGCCGAGCaucaCGCGAUGAgcggcgugugcguCGCCGa -3'
miRNA:   3'- -GGCCuGCGGCUCG----GCGCUGCU-------------GCGGU- -5'
33065 3' -62.2 NC_007497.1 + 4362 0.68 0.267674
Target:  5'- aCCGGGCacaaaaGCC-AGCCGCccgugcugaucGGCGACGCaCAc -3'
miRNA:   3'- -GGCCUG------CGGcUCGGCG-----------CUGCUGCG-GU- -5'
33065 3' -62.2 NC_007497.1 + 4783 0.69 0.242059
Target:  5'- uUCGGAauuCGCCcuuggcguaugguGGGCCGCGAUGAaGCCc -3'
miRNA:   3'- -GGCCU---GCGG-------------CUCGGCGCUGCUgCGGu -5'
33065 3' -62.2 NC_007497.1 + 4918 0.67 0.299679
Target:  5'- cCCGGAaucacgagauugcaCGCCGGGCCGCugaGAaguucaaGGCGCa- -3'
miRNA:   3'- -GGCCU--------------GCGGCUCGGCG---CUg------CUGCGgu -5'
33065 3' -62.2 NC_007497.1 + 6254 0.7 0.188584
Target:  5'- cCCGacAUGCCGAGCCGUGGCGccagcgacuCGCUAc -3'
miRNA:   3'- -GGCc-UGCGGCUCGGCGCUGCu--------GCGGU- -5'
33065 3' -62.2 NC_007497.1 + 6342 0.66 0.379884
Target:  5'- cCCaGGugGUagCGAGUCGC--UGGCGCCAc -3'
miRNA:   3'- -GG-CCugCG--GCUCGGCGcuGCUGCGGU- -5'
33065 3' -62.2 NC_007497.1 + 7172 0.66 0.363235
Target:  5'- gCUGGA-GCCGAGCaaCGCGAagaucaGguGCGCCGg -3'
miRNA:   3'- -GGCCUgCGGCUCG--GCGCUg-----C--UGCGGU- -5'
33065 3' -62.2 NC_007497.1 + 8752 0.67 0.301819
Target:  5'- aCCGGcgcaggcaaGCUGuGCCGaCGACGGCGaCCu -3'
miRNA:   3'- -GGCCug-------CGGCuCGGC-GCUGCUGC-GGu -5'
33065 3' -62.2 NC_007497.1 + 9637 0.77 0.064599
Target:  5'- cCCGGcGCGCCG-GCCGCGACGuCGgCu -3'
miRNA:   3'- -GGCC-UGCGGCuCGGCGCUGCuGCgGu -5'
33065 3' -62.2 NC_007497.1 + 11691 0.7 0.208818
Target:  5'- gCCGGGaguaGCCGGGCgCGCGAgugaagcauCGAUaGCCGa -3'
miRNA:   3'- -GGCCUg---CGGCUCG-GCGCU---------GCUG-CGGU- -5'
33065 3' -62.2 NC_007497.1 + 11725 0.71 0.165302
Target:  5'- uCCGGGcCGCgCGAgGuuGCGACGAguuaccaCGCCAc -3'
miRNA:   3'- -GGCCU-GCG-GCU-CggCGCUGCU-------GCGGU- -5'
33065 3' -62.2 NC_007497.1 + 13489 0.66 0.355103
Target:  5'- -aGGAUGUCGAGCagaGgGAuuuCGGCGUCAu -3'
miRNA:   3'- ggCCUGCGGCUCGg--CgCU---GCUGCGGU- -5'
33065 3' -62.2 NC_007497.1 + 13641 0.72 0.137921
Target:  5'- aUGGGcCGCCGcacgGGCCGCaGGgGACGCCGc -3'
miRNA:   3'- gGCCU-GCGGC----UCGGCG-CUgCUGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.