miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33065 3' -62.2 NC_007497.1 + 34625 0.69 0.236717
Target:  5'- gCGGccaaGCCGGcggucGCCGCGGUGGCGCCu -3'
miRNA:   3'- gGCCug--CGGCU-----CGGCGCUGCUGCGGu -5'
33065 3' -62.2 NC_007497.1 + 6254 0.7 0.188584
Target:  5'- cCCGacAUGCCGAGCCGUGGCGccagcgacuCGCUAc -3'
miRNA:   3'- -GGCc-UGCGGCUCGGCGCUGCu--------GCGGU- -5'
33065 3' -62.2 NC_007497.1 + 14085 0.7 0.198476
Target:  5'- cCUGcucuACGCUGAaaccuGCUGCGugGACGCCGg -3'
miRNA:   3'- -GGCc---UGCGGCU-----CGGCGCugCUGCGGU- -5'
33065 3' -62.2 NC_007497.1 + 38145 0.7 0.198476
Target:  5'- cCCGGaucacguucGCGCCGGcGaCCGUGGCG-CGCCu -3'
miRNA:   3'- -GGCC---------UGCGGCU-C-GGCGCUGCuGCGGu -5'
33065 3' -62.2 NC_007497.1 + 24183 0.7 0.198476
Target:  5'- cCCcGAUGuCCGucAGCgucaGCGACGACGCCAc -3'
miRNA:   3'- -GGcCUGC-GGC--UCGg---CGCUGCUGCGGU- -5'
33065 3' -62.2 NC_007497.1 + 11691 0.7 0.208818
Target:  5'- gCCGGGaguaGCCGGGCgCGCGAgugaagcauCGAUaGCCGa -3'
miRNA:   3'- -GGCCUg---CGGCUCG-GCGCU---------GCUG-CGGU- -5'
33065 3' -62.2 NC_007497.1 + 33404 0.7 0.208818
Target:  5'- aCGGGCGCCGcccGcCCGCGucCGAUggGCCAg -3'
miRNA:   3'- gGCCUGCGGCu--C-GGCGCu-GCUG--CGGU- -5'
33065 3' -62.2 NC_007497.1 + 35646 0.69 0.2252
Target:  5'- gCCcGACGCgaaugcuugccCGAGCUGC-ACGAUGCCAa -3'
miRNA:   3'- -GGcCUGCG-----------GCUCGGCGcUGCUGCGGU- -5'
33065 3' -62.2 NC_007497.1 + 17586 0.69 0.2252
Target:  5'- aCGGAUaCCGAGCCGCaGugGAuCGUgAa -3'
miRNA:   3'- gGCCUGcGGCUCGGCG-CugCU-GCGgU- -5'
33065 3' -62.2 NC_007497.1 + 16320 0.72 0.153244
Target:  5'- aCGGGCGUCGGaacgcauacgcGCUGCu-CGACGCCAa -3'
miRNA:   3'- gGCCUGCGGCU-----------CGGCGcuGCUGCGGU- -5'
33065 3' -62.2 NC_007497.1 + 4243 0.72 0.152843
Target:  5'- cCUGGcCGCCGAGCaucaCGCGAUGAgcggcgugugcguCGCCGa -3'
miRNA:   3'- -GGCCuGCGGCUCG----GCGCUGCU-------------GCGGU- -5'
33065 3' -62.2 NC_007497.1 + 13707 0.72 0.137921
Target:  5'- aUGGGuCGCCGcacgGGCCGCaGGgGACGCCGc -3'
miRNA:   3'- gGCCU-GCGGC----UCGGCG-CUgCUGCGGU- -5'
33065 3' -62.2 NC_007497.1 + 9637 0.77 0.064599
Target:  5'- cCCGGcGCGCCG-GCCGCGACGuCGgCu -3'
miRNA:   3'- -GGCC-UGCGGCuCGGCGCUGCuGCgGu -5'
33065 3' -62.2 NC_007497.1 + 13872 0.75 0.082701
Target:  5'- aCgGGACGCCGcaugGGCCGCcgcaGGgGACGCCGc -3'
miRNA:   3'- -GgCCUGCGGC----UCGGCG----CUgCUGCGGU- -5'
33065 3' -62.2 NC_007497.1 + 13827 0.74 0.097361
Target:  5'- aCgGGACGCCGcaggGGCCGCcgcaGGgGGCGCCGc -3'
miRNA:   3'- -GgCCUGCGGC----UCGGCG----CUgCUGCGGU- -5'
33065 3' -62.2 NC_007497.1 + 2438 0.73 0.114454
Target:  5'- gCCGGuGCGCCGcugGGCguucgCGCGGCGACGCg- -3'
miRNA:   3'- -GGCC-UGCGGC---UCG-----GCGCUGCUGCGgu -5'
33065 3' -62.2 NC_007497.1 + 13676 0.73 0.120749
Target:  5'- -gGGACGCCGcaggGGCCGCacGgGACGCCGc -3'
miRNA:   3'- ggCCUGCGGC----UCGGCGc-UgCUGCGGU- -5'
33065 3' -62.2 NC_007497.1 + 13742 0.73 0.120749
Target:  5'- -gGGACGCCGcaggGGCCGCacGgGACGCCGc -3'
miRNA:   3'- ggCCUGCGGC----UCGGCGc-UgCUGCGGU- -5'
33065 3' -62.2 NC_007497.1 + 35954 0.72 0.134316
Target:  5'- aUGGAUGCCGAacGCCGCGGCcGCGgCu -3'
miRNA:   3'- gGCCUGCGGCU--CGGCGCUGcUGCgGu -5'
33065 3' -62.2 NC_007497.1 + 13641 0.72 0.137921
Target:  5'- aUGGGcCGCCGcacgGGCCGCaGGgGACGCCGc -3'
miRNA:   3'- gGCCU-GCGGC----UCGGCG-CUgCUGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.