miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33068 5' -48.6 NC_007497.1 + 28025 1.13 0.002102
Target:  5'- cGAUCACCGAAAUCAUCGACCGCAAGCu -3'
miRNA:   3'- -CUAGUGGCUUUAGUAGCUGGCGUUCG- -5'
33068 5' -48.6 NC_007497.1 + 24669 0.79 0.362342
Target:  5'- --aUACCGAAAUUGcCGGCUGCAGGCg -3'
miRNA:   3'- cuaGUGGCUUUAGUaGCUGGCGUUCG- -5'
33068 5' -48.6 NC_007497.1 + 5073 0.76 0.471655
Target:  5'- aGGUCGCCGAGAaguUCGcUGACCacugGCGAGCg -3'
miRNA:   3'- -CUAGUGGCUUU---AGUaGCUGG----CGUUCG- -5'
33068 5' -48.6 NC_007497.1 + 30678 0.74 0.606956
Target:  5'- cGGUCACCGu-AUCgagcuauuugagGUCGACUGCAcAGCg -3'
miRNA:   3'- -CUAGUGGCuuUAG------------UAGCUGGCGU-UCG- -5'
33068 5' -48.6 NC_007497.1 + 37681 0.74 0.618618
Target:  5'- -cUgGCCGAccaGAUCAUCGAUCGCGuggaaucgaccGGCa -3'
miRNA:   3'- cuAgUGGCU---UUAGUAGCUGGCGU-----------UCG- -5'
33068 5' -48.6 NC_007497.1 + 28595 0.74 0.618618
Target:  5'- aGUCGCCGGAcagccUCcauUCGACCGCGcGCg -3'
miRNA:   3'- cUAGUGGCUUu----AGu--AGCUGGCGUuCG- -5'
33068 5' -48.6 NC_007497.1 + 585 0.73 0.665283
Target:  5'- cAUUACgcAGAUCGUCG-CCGCGAGCg -3'
miRNA:   3'- cUAGUGgcUUUAGUAGCuGGCGUUCG- -5'
33068 5' -48.6 NC_007497.1 + 1925 0.73 0.676893
Target:  5'- cGAUCAguuCCGAGAUgCAcCGGCCGCuGGUa -3'
miRNA:   3'- -CUAGU---GGCUUUA-GUaGCUGGCGuUCG- -5'
33068 5' -48.6 NC_007497.1 + 25718 0.72 0.688455
Target:  5'- --aCAaCGGGAUCAUCGAaUCGCAAGUg -3'
miRNA:   3'- cuaGUgGCUUUAGUAGCU-GGCGUUCG- -5'
33068 5' -48.6 NC_007497.1 + 28726 0.72 0.711384
Target:  5'- cGAUCACCGGu----UCGAaggUCGCGAGCu -3'
miRNA:   3'- -CUAGUGGCUuuaguAGCU---GGCGUUCG- -5'
33068 5' -48.6 NC_007497.1 + 1051 0.72 0.711384
Target:  5'- -cUCACgGAug-CGUCGGCCGCGuacuGCu -3'
miRNA:   3'- cuAGUGgCUuuaGUAGCUGGCGUu---CG- -5'
33068 5' -48.6 NC_007497.1 + 15000 0.72 0.722724
Target:  5'- uGAUCAgCGccg-CGUCGAUCGCAAGa -3'
miRNA:   3'- -CUAGUgGCuuuaGUAGCUGGCGUUCg -5'
33068 5' -48.6 NC_007497.1 + 1880 0.72 0.722724
Target:  5'- gGAUCGCgCGGAuUC--CGACCGuCAAGCg -3'
miRNA:   3'- -CUAGUG-GCUUuAGuaGCUGGC-GUUCG- -5'
33068 5' -48.6 NC_007497.1 + 27698 0.72 0.733962
Target:  5'- cGAUCAUCGAug-CAUCGACgGUcuuuccGAGCc -3'
miRNA:   3'- -CUAGUGGCUuuaGUAGCUGgCG------UUCG- -5'
33068 5' -48.6 NC_007497.1 + 27990 0.71 0.766931
Target:  5'- -uUCACCGu-GUCggCGAUCaGCGAGCu -3'
miRNA:   3'- cuAGUGGCuuUAGuaGCUGG-CGUUCG- -5'
33068 5' -48.6 NC_007497.1 + 34864 0.71 0.766931
Target:  5'- -cUCGCgCGcGAUCA-CGGCCGCAuacGGCg -3'
miRNA:   3'- cuAGUG-GCuUUAGUaGCUGGCGU---UCG- -5'
33068 5' -48.6 NC_007497.1 + 4589 0.71 0.766931
Target:  5'- cGAUcCGCCGAGcAUCuucaCGAuguCCGCAGGCa -3'
miRNA:   3'- -CUA-GUGGCUU-UAGua--GCU---GGCGUUCG- -5'
33068 5' -48.6 NC_007497.1 + 29942 0.71 0.777627
Target:  5'- -cUCGCCGAGuAUCcgCGcgaguGCUGCGGGCu -3'
miRNA:   3'- cuAGUGGCUU-UAGuaGC-----UGGCGUUCG- -5'
33068 5' -48.6 NC_007497.1 + 30538 0.71 0.777627
Target:  5'- --cCACaCGAucgaCGUCGACUGCAGGUg -3'
miRNA:   3'- cuaGUG-GCUuua-GUAGCUGGCGUUCG- -5'
33068 5' -48.6 NC_007497.1 + 35959 0.71 0.777627
Target:  5'- ---uGCCGAAcgCcgCGGCCGC-GGCu -3'
miRNA:   3'- cuagUGGCUUuaGuaGCUGGCGuUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.