miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33068 5' -48.6 NC_007497.1 + 26959 0.68 0.91111
Target:  5'- --gCAUCGAAGcgGUCGACCaacGUAAGCg -3'
miRNA:   3'- cuaGUGGCUUUagUAGCUGG---CGUUCG- -5'
33068 5' -48.6 NC_007497.1 + 20937 0.69 0.873196
Target:  5'- uGAUCGgCGAGAaacggaucUCGUCGACgGCGAa- -3'
miRNA:   3'- -CUAGUgGCUUU--------AGUAGCUGgCGUUcg -5'
33068 5' -48.6 NC_007497.1 + 35717 0.69 0.873196
Target:  5'- --cCACCGccuugcuGAUCGucUCGACCaGCGGGCc -3'
miRNA:   3'- cuaGUGGCu------UUAGU--AGCUGG-CGUUCG- -5'
33068 5' -48.6 NC_007497.1 + 3328 0.68 0.881368
Target:  5'- uGAUCGCCGuc--CAUCGGCgUGC-GGCg -3'
miRNA:   3'- -CUAGUGGCuuuaGUAGCUG-GCGuUCG- -5'
33068 5' -48.6 NC_007497.1 + 19900 0.68 0.881368
Target:  5'- gGGUCAUCG-AGUCAggccaGACCGUcgugcGAGCa -3'
miRNA:   3'- -CUAGUGGCuUUAGUag---CUGGCG-----UUCG- -5'
33068 5' -48.6 NC_007497.1 + 28814 0.68 0.88925
Target:  5'- --cCGCCGAGcAUCAUCGAagcgcccaUCGCGaucAGCg -3'
miRNA:   3'- cuaGUGGCUU-UAGUAGCU--------GGCGU---UCG- -5'
33068 5' -48.6 NC_007497.1 + 40934 0.68 0.88925
Target:  5'- cGAUgACCGAGG-CugcCGacGCCGCAAGCc -3'
miRNA:   3'- -CUAgUGGCUUUaGua-GC--UGGCGUUCG- -5'
33068 5' -48.6 NC_007497.1 + 23751 0.68 0.906957
Target:  5'- ---uGCCGAcGUUGUaugcgaagcucacggCGGCCGCGAGCu -3'
miRNA:   3'- cuagUGGCUuUAGUA---------------GCUGGCGUUCG- -5'
33068 5' -48.6 NC_007497.1 + 41135 0.68 0.91111
Target:  5'- uGUCGCCGAuggagucguaGAUCGaaaUCGccGCCGCAucgucGGCg -3'
miRNA:   3'- cUAGUGGCU----------UUAGU---AGC--UGGCGU-----UCG- -5'
33068 5' -48.6 NC_007497.1 + 26171 0.69 0.873196
Target:  5'- --aCGCCGGGAcCGUCGGCCGgAuaccauGGCc -3'
miRNA:   3'- cuaGUGGCUUUaGUAGCUGGCgU------UCG- -5'
33068 5' -48.6 NC_007497.1 + 27038 0.69 0.864744
Target:  5'- gGAUCGCCGugaagcGAUCAcccggCGccACUGCGGGCg -3'
miRNA:   3'- -CUAGUGGCu-----UUAGUa----GC--UGGCGUUCG- -5'
33068 5' -48.6 NC_007497.1 + 25915 0.69 0.856019
Target:  5'- cGGUCGCCGAAuUCAUCugaGCUGCuacGGUc -3'
miRNA:   3'- -CUAGUGGCUUuAGUAGc--UGGCGu--UCG- -5'
33068 5' -48.6 NC_007497.1 + 27698 0.72 0.733962
Target:  5'- cGAUCAUCGAug-CAUCGACgGUcuuuccGAGCc -3'
miRNA:   3'- -CUAGUGGCUuuaGUAGCUGgCG------UUCG- -5'
33068 5' -48.6 NC_007497.1 + 27990 0.71 0.766931
Target:  5'- -uUCACCGu-GUCggCGAUCaGCGAGCu -3'
miRNA:   3'- cuAGUGGCuuUAGuaGCUGG-CGUUCG- -5'
33068 5' -48.6 NC_007497.1 + 4589 0.71 0.766931
Target:  5'- cGAUcCGCCGAGcAUCuucaCGAuguCCGCAGGCa -3'
miRNA:   3'- -CUA-GUGGCUU-UAGua--GCU---GGCGUUCG- -5'
33068 5' -48.6 NC_007497.1 + 34864 0.71 0.766931
Target:  5'- -cUCGCgCGcGAUCA-CGGCCGCAuacGGCg -3'
miRNA:   3'- cuAGUG-GCuUUAGUaGCUGGCGU---UCG- -5'
33068 5' -48.6 NC_007497.1 + 35959 0.71 0.777627
Target:  5'- ---uGCCGAAcgCcgCGGCCGC-GGCu -3'
miRNA:   3'- cuagUGGCUUuaGuaGCUGGCGuUCG- -5'
33068 5' -48.6 NC_007497.1 + 30538 0.71 0.777627
Target:  5'- --cCACaCGAucgaCGUCGACUGCAGGUg -3'
miRNA:   3'- cuaGUG-GCUuua-GUAGCUGGCGUUCG- -5'
33068 5' -48.6 NC_007497.1 + 1783 0.7 0.828301
Target:  5'- --cCACC----UCGaCGACCGCGAGCa -3'
miRNA:   3'- cuaGUGGcuuuAGUaGCUGGCGUUCG- -5'
33068 5' -48.6 NC_007497.1 + 23937 0.69 0.84703
Target:  5'- uGAUC-CCGAucggGUCGGCCGCGcgacgAGCu -3'
miRNA:   3'- -CUAGuGGCUuuagUAGCUGGCGU-----UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.