miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33068 5' -48.6 NC_007497.1 + 232 0.67 0.930205
Target:  5'- uGAUCGCCGA-----UCGugC-CAAGCg -3'
miRNA:   3'- -CUAGUGGCUuuaguAGCugGcGUUCG- -5'
33068 5' -48.6 NC_007497.1 + 288 0.69 0.837787
Target:  5'- cGAUCGgCGAucacAUCGUCGcgcACCGC-GGCg -3'
miRNA:   3'- -CUAGUgGCUu---UAGUAGC---UGGCGuUCG- -5'
33068 5' -48.6 NC_007497.1 + 585 0.73 0.665283
Target:  5'- cAUUACgcAGAUCGUCG-CCGCGAGCg -3'
miRNA:   3'- cUAGUGgcUUUAGUAGCuGGCGUUCG- -5'
33068 5' -48.6 NC_007497.1 + 828 0.67 0.924151
Target:  5'- ---aAUCGAGcgCAagcuaUCGACCGCAGGa -3'
miRNA:   3'- cuagUGGCUUuaGU-----AGCUGGCGUUCg -5'
33068 5' -48.6 NC_007497.1 + 1051 0.72 0.711384
Target:  5'- -cUCACgGAug-CGUCGGCCGCGuacuGCu -3'
miRNA:   3'- cuAGUGgCUuuaGUAGCUGGCGUu---CG- -5'
33068 5' -48.6 NC_007497.1 + 1529 0.66 0.951328
Target:  5'- cGGUCACCGAaucgcgaugacgGAUCGcCGAUaugaGCAaaGGCu -3'
miRNA:   3'- -CUAGUGGCU------------UUAGUaGCUGg---CGU--UCG- -5'
33068 5' -48.6 NC_007497.1 + 1783 0.7 0.828301
Target:  5'- --cCACC----UCGaCGACCGCGAGCa -3'
miRNA:   3'- cuaGUGGcuuuAGUaGCUGGCGUUCG- -5'
33068 5' -48.6 NC_007497.1 + 1880 0.72 0.722724
Target:  5'- gGAUCGCgCGGAuUC--CGACCGuCAAGCg -3'
miRNA:   3'- -CUAGUG-GCUUuAGuaGCUGGC-GUUCG- -5'
33068 5' -48.6 NC_007497.1 + 1925 0.73 0.676893
Target:  5'- cGAUCAguuCCGAGAUgCAcCGGCCGCuGGUa -3'
miRNA:   3'- -CUAGU---GGCUUUA-GUaGCUGGCGuUCG- -5'
33068 5' -48.6 NC_007497.1 + 2159 0.67 0.917786
Target:  5'- --cCACCGu-GUCAUCGAUCGgAuucAGCc -3'
miRNA:   3'- cuaGUGGCuuUAGUAGCUGGCgU---UCG- -5'
33068 5' -48.6 NC_007497.1 + 2756 0.69 0.837787
Target:  5'- cGAagACCGGGAUC-UCGcGCCGCAcggugaugaAGCa -3'
miRNA:   3'- -CUagUGGCUUUAGuAGC-UGGCGU---------UCG- -5'
33068 5' -48.6 NC_007497.1 + 3328 0.68 0.881368
Target:  5'- uGAUCGCCGuc--CAUCGGCgUGC-GGCg -3'
miRNA:   3'- -CUAGUGGCuuuaGUAGCUG-GCGuUCG- -5'
33068 5' -48.6 NC_007497.1 + 4589 0.71 0.766931
Target:  5'- cGAUcCGCCGAGcAUCuucaCGAuguCCGCAGGCa -3'
miRNA:   3'- -CUA-GUGGCUU-UAGua--GCU---GGCGUUCG- -5'
33068 5' -48.6 NC_007497.1 + 4634 0.66 0.945001
Target:  5'- -cUgACCGGAGUCAggauugacgcugugUCGACCG--AGCg -3'
miRNA:   3'- cuAgUGGCUUUAGU--------------AGCUGGCguUCG- -5'
33068 5' -48.6 NC_007497.1 + 5073 0.76 0.471655
Target:  5'- aGGUCGCCGAGAaguUCGcUGACCacugGCGAGCg -3'
miRNA:   3'- -CUAGUGGCUUU---AGUaGCUGG----CGUUCG- -5'
33068 5' -48.6 NC_007497.1 + 5113 0.66 0.946507
Target:  5'- -cUCGCUGAGcaaccgaCGUgGACCGuCGAGCa -3'
miRNA:   3'- cuAGUGGCUUua-----GUAgCUGGC-GUUCG- -5'
33068 5' -48.6 NC_007497.1 + 5815 0.66 0.955849
Target:  5'- aGUCcgcCCGGcagcuUCGUCGGCUGaCGAGCg -3'
miRNA:   3'- cUAGu--GGCUuu---AGUAGCUGGC-GUUCG- -5'
33068 5' -48.6 NC_007497.1 + 6210 0.7 0.808644
Target:  5'- cGAUgACCGGAuuuuggaggCGUgGGCgCGCGAGCg -3'
miRNA:   3'- -CUAgUGGCUUua-------GUAgCUG-GCGUUCG- -5'
33068 5' -48.6 NC_007497.1 + 7676 0.66 0.955849
Target:  5'- --gCugCGAAuUCGUCGAugcagcCCGCA-GCg -3'
miRNA:   3'- cuaGugGCUUuAGUAGCU------GGCGUuCG- -5'
33068 5' -48.6 NC_007497.1 + 8831 0.67 0.930205
Target:  5'- aGGUCGCCG---UCGUCGGCacaGCuuGCc -3'
miRNA:   3'- -CUAGUGGCuuuAGUAGCUGg--CGuuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.