miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33070 3' -51.3 NC_007497.1 + 30323 1.11 0.001429
Target:  5'- aUCGAGCAGAAAAGCGACGAACAGCCGg -3'
miRNA:   3'- -AGCUCGUCUUUUCGCUGCUUGUCGGC- -5'
33070 3' -51.3 NC_007497.1 + 14851 0.84 0.106532
Target:  5'- cCGAGCAGuc-GGCGACGAGCAaGCCa -3'
miRNA:   3'- aGCUCGUCuuuUCGCUGCUUGU-CGGc -5'
33070 3' -51.3 NC_007497.1 + 14334 0.76 0.324437
Target:  5'- aUCGcGCAGGAAAGuCGACGAAguGCUc -3'
miRNA:   3'- -AGCuCGUCUUUUC-GCUGCUUguCGGc -5'
33070 3' -51.3 NC_007497.1 + 4113 0.75 0.37682
Target:  5'- gCGAGCGGuucGGgGACGcGGCGGCCGa -3'
miRNA:   3'- aGCUCGUCuuuUCgCUGC-UUGUCGGC- -5'
33070 3' -51.3 NC_007497.1 + 26080 0.75 0.386087
Target:  5'- cUCGAGCAGAucguGGCccaGCGAACuuuuGCCGa -3'
miRNA:   3'- -AGCUCGUCUuu--UCGc--UGCUUGu---CGGC- -5'
33070 3' -51.3 NC_007497.1 + 41518 0.74 0.405067
Target:  5'- uUCcGGCAGGAAGGC-ACGAGCcGCCGc -3'
miRNA:   3'- -AGcUCGUCUUUUCGcUGCUUGuCGGC- -5'
33070 3' -51.3 NC_007497.1 + 18629 0.74 0.405067
Target:  5'- -aGGGCGGAGcGGCGugGAAagaGGCUGa -3'
miRNA:   3'- agCUCGUCUUuUCGCugCUUg--UCGGC- -5'
33070 3' -51.3 NC_007497.1 + 36824 0.73 0.465366
Target:  5'- gUCGAGcCGGAcGA-CGACGAACAGaCCGc -3'
miRNA:   3'- -AGCUC-GUCUuUUcGCUGCUUGUC-GGC- -5'
33070 3' -51.3 NC_007497.1 + 23267 0.73 0.465366
Target:  5'- gCGGGCGGcu--GCGACGAGCuGGUCGa -3'
miRNA:   3'- aGCUCGUCuuuuCGCUGCUUG-UCGGC- -5'
33070 3' -51.3 NC_007497.1 + 10810 0.73 0.486485
Target:  5'- gUCGuaGGCAGAGGcagcGGUGGCGAAUcucgGGCCGa -3'
miRNA:   3'- -AGC--UCGUCUUU----UCGCUGCUUG----UCGGC- -5'
33070 3' -51.3 NC_007497.1 + 17353 0.73 0.493984
Target:  5'- cCGuAGCAGAugaugcagcagugcGGGGCGAUGAGCGGgCGa -3'
miRNA:   3'- aGC-UCGUCU--------------UUUCGCUGCUUGUCgGC- -5'
33070 3' -51.3 NC_007497.1 + 23321 0.73 0.497214
Target:  5'- aCGAGCAGcAAAAGCauccGCGAgcGCGGCUGu -3'
miRNA:   3'- aGCUCGUC-UUUUCGc---UGCU--UGUCGGC- -5'
33070 3' -51.3 NC_007497.1 + 3944 0.73 0.497214
Target:  5'- aCGAcccGCAGAgggcgauuuucGAGGCGACGGGCaaucGGCCGc -3'
miRNA:   3'- aGCU---CGUCU-----------UUUCGCUGCUUG----UCGGC- -5'
33070 3' -51.3 NC_007497.1 + 26931 0.72 0.51898
Target:  5'- gCGuGCAGGAAAGUGACGAagaaggGCAGaUCGc -3'
miRNA:   3'- aGCuCGUCUUUUCGCUGCU------UGUC-GGC- -5'
33070 3' -51.3 NC_007497.1 + 32304 0.72 0.51898
Target:  5'- gCGGGCAGuucGGUGGCGAuagcgcggcacuGCAGCUGa -3'
miRNA:   3'- aGCUCGUCuuuUCGCUGCU------------UGUCGGC- -5'
33070 3' -51.3 NC_007497.1 + 23010 0.72 0.530004
Target:  5'- cCGcauGCGGggGcGGCGACGAcaGCGGCCc -3'
miRNA:   3'- aGCu--CGUCuuU-UCGCUGCU--UGUCGGc -5'
33070 3' -51.3 NC_007497.1 + 41672 0.72 0.541113
Target:  5'- aCGAGCuGggGcAGCGGCaucGAACAGCUc -3'
miRNA:   3'- aGCUCGuCuuU-UCGCUG---CUUGUCGGc -5'
33070 3' -51.3 NC_007497.1 + 39943 0.72 0.541113
Target:  5'- aCGAGCGGcuGGGuCGGCGAAgcaAGCCa -3'
miRNA:   3'- aGCUCGUCuuUUC-GCUGCUUg--UCGGc -5'
33070 3' -51.3 NC_007497.1 + 23649 0.71 0.586232
Target:  5'- gCGAGCuGAGGAGCGcgcacuguGCGAGCgggGGCUGu -3'
miRNA:   3'- aGCUCGuCUUUUCGC--------UGCUUG---UCGGC- -5'
33070 3' -51.3 NC_007497.1 + 14904 0.7 0.632011
Target:  5'- gUUGGGC-GAu--GCGGCGAACAGCg- -3'
miRNA:   3'- -AGCUCGuCUuuuCGCUGCUUGUCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.